Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms (Q33911015)

30 July 2017

Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms (English)

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single-nucleotide polymorphism

30 July 2017

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Zhaohui S Qin

2

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author name string

Hosung Kang

series ordinal

1

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30 July 2017

Tianhua Niu

series ordinal

3

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30 July 2017

Jun S Liu

series ordinal

4

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30 July 2017

language of work or name

English

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publication date

13 February 2004

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American Journal of Human Genetics

30 July 2017

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30 July 2017

74

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30 July 2017

3

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30 July 2017

495-510

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The Interaction of Selection and Linkage. I. General Considerations; Heterotic Models

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

SNP genotyping on a genome-wide amplified DOP-PCR template

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Haplotype inference in random population samples.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

High-throughput genotyping of single nucleotide polymorphisms using new biplex invader technology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Detection and integration of genotyping errors in statistical genetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

High-throughput genotyping with single nucleotide polymorphisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

A permutation procedure for the haplotype method for identification of disease-predisposing variants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

A New Statistical Method for Haplotype Reconstruction from Population Data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Genetic analysis of case/control data using estimated haplotype frequencies: application to APOE locus variation and Alzheimer's disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Searching for genetic determinants in the new millennium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

A multipoint method for detecting genotyping errors and mutations in sibling-pair linkage data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Conversion of diploidy to haploidy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Molecular haplotyping of genetic markers 10 kb apart by allele-specific long-range PCR.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

An E-M algorithm and testing strategy for multiple-locus haplotypes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Inference of haplotypes from PCR-amplified samples of diploid populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Influence of aberrant observations on high-resolution linkage analysis outcomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

A prospective study of XRCC1 haplotypes and their interaction with plasma carotenoids on breast cancer risk.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Assessing optimal neural network architecture for identifying disease-associated multi-marker genotypes using a permutation test, and application to calpain 10 polymorphisms associated with diabetes.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Haplotypes at the OPRM1 locus are associated with susceptibility to substance dependence in European-Americans

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

FP-TDI SNP scoring by manual and statistical procedures: a study of error rates and types

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

The impact of genotyping error on family-based analysis of quantitative traits

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1182263

Angiotensinogen gene haplotype and hypertension: interaction with ACE gene I allele

29 October 2018

1 reference

12 December 2020

Utility and accuracy of template-directed dye-terminator incorporation with fluorescence-polarization detection for genotyping single nucleotide polymorphisms

1 reference

12 December 2020

The impact of genotyping error on haplotype reconstruction and frequency estimation

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12 December 2020

The effects of genotyping errors and interference on estimation of genetic distance

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12 December 2020

Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies

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12 December 2020

Towards fully automated genome-wide polymorphism screening

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12 December 2020

Identifiers

DOI

10.1086/382284

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30 July 2017

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30 July 2017

1 reference