Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform. (Q33917558)

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2 February 2020

title

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform (English)

1 reference

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2 February 2020

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5

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2 February 2020

4

Sharon L R Kardia

1 reference

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2 February 2020

2

Elizabeth J Atkinson

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2 February 2020

author name string

Jeanette E Eckel-Passow

series ordinal

1

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2 February 2020

Sooraj Maharjan

series ordinal

3

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2 February 2020

publication date

31 May 2011

1 reference

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2 February 2020

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2 February 2020

volume

12

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2 February 2020

page(s)

220

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Creative Commons Attribution 2.0 Generic

2 February 2020

copyright license

start time

31 May 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

A map of human genome variation from population-scale sequencing

1 reference

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

5 July 2018

1 reference

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Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Comparing CNV detection methods for SNP arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146450

Estimation and assessment of raw copy numbers at the single locus level

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-12-220

21 January 2018

Identifiers

DOI

10.1186/1471-2105-12-220

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21627824%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/Eckel-PassowAMKA11

2 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21627824%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

21627824

1 reference