Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species (Q33920150)

30 July 2017

Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species (English)

1 reference

30 July 2017

Tim Langdon

3

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author name string

Hye-Ran Lee

1

1 reference

30 July 2017

Wenli Zhang

2

1 reference

30 July 2017

Weiwei Jin

4

1 reference

30 July 2017

Huihuang Yan

5

1 reference

30 July 2017

Zhukuan Cheng

6

1 reference

30 July 2017

Jiming Jiang

7

1 reference

30 July 2017

language of work or name

English

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publication date

22 July 2005

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

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30 July 2017

102

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30 July 2017

33

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30 July 2017

11793-11798

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Rapid creation of BAC-based human artificial chromosome vectors by transposition with synthetic alpha-satellite arrays

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Adaptive evolution of centromere proteins in plants and animals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Building the centromere: from foundation proteins to 3D organization.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Rapid recent growth and divergence of rice nuclear genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

WebLogo: A Sequence Logo Generator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Sequencing of a rice centromere uncovers active genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

A molecular view of plant centromeres

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

DNA and proteins of plant centromeres.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

DNA analysis servers: plot.it, bend.it, model.it and IS.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

CENP-B box is required for de novo centromere chromatin assembly on human alphoid DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Conflict begets complexity: the evolution of centromeres

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

PatternHunter: faster and more sensitive homology search

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

The centromere paradox: stable inheritance with rapidly evolving DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Adaptive evolution of Cid, a centromere-specific histone in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

The large-scale organization of the centromeric region in Beta species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Retrotransposon evolution in diverse plant genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Phylogeny of rice genomes with emphasis on origins of allotetraploid species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Isolation of a species-specific satellite DNA with a novel CENP-B-like box from the North African rodent Lemniscomys barbarus.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Interspersed centromeric element with a CENP-B box-like motif in Chironomus pallidivittatus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Rice (Oryza sativa) centromeric regions consist of complex DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Origin, dispersal, cultivation and variation of rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

An improved bacterial colony lysis procedure enables direct DNA hybridisation using short (10, 11 bases) oligonucleotides to cosmids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Investigation of the organization of mammalian chromosomes at the DNA sequence level

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

Centromeres: the missing link in the development of human artificial chromosomes.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Conserved patterns in the evolution of Tribolium satellite DNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Transcription of lampbrush chromosomes of a centromerically localized highly repeated DNA in pigeon (Columba) relates to sequence arrangement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

A novel repetitive sequence of sugar cane, SCEN family, locating on centromeric regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Adaptive evolution of the histone fold domain in centromeric histones

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Evolution of Repeated DNA Sequences by Unequal Crossover

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Comparative genetics at the gene and chromosome levels between rice ( Oryza sativa) and wildrice ( Zizania palustris).

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Molecular and physical organization of highly repetitive, undermethylated DNA from Pennisetum glaucum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Something from nothing: the evolution and utility of satellite repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Molecular-cytogenetic characterization of a higher plant centromere/kinetochore complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Retrotransposon-related DNA sequences in the centromeres of grass chromosomes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187982

The evolutionary dynamics of repetitive DNA in eukaryotes

29 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503863102

Conserved patterns of bending in satellite and nucleosome positioning DNA

21 January 2018

1 reference

12 December 2020

Origin of the main class of repetitive DNA within selected Pennisetum species

1 reference

12 December 2020

Identification of a family of human centromere proteins using autoimmune sera from patients with scleroderma

1 reference

12 December 2020

Maize centromeres: organization and functional adaptation in the genetic background of oat

1 reference

12 December 2020

Late-replicating satellites: something for all centromeres?

1 reference

12 December 2020

Molecular and functional dissection of the maize B chromosome centromere

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0503863102

1 reference

30 July 2017

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1 reference

30 July 2017

1 reference