The power of phylogenetic comparison in revealing protein function (Q33927600)

30 July 2017

The power of phylogenetic comparison in revealing protein function (English)

1 reference

30 July 2017

1 reference

Ziheng Yang

1

1 reference

PubMed ID

15728394

30 July 2017

language of work or name

English

0 references

publication date

22 February 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

102

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30 July 2017

9

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30 July 2017

3179-3180

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Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

High rate of viral evolution associated with the emergence of carnivore parvovirus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Convergent neofunctionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Comparative analyses of multi-species sequences from targeted genomic regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Identification of residues in glutathione transferase capable of driving functional diversification in evolution. A novel approach to protein redesign

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Structure and evolution of plant disease resistance genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Characterization and evolutionary analysis of a large polygalacturonase gene family in the oomycete plant pathogen Phytophthora cinnamomi

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

The rapid evolution of reproductive proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Strong diversifying selection on domains of the Plasmodium falciparum apical membrane antigen 1 gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Codon-substitution models for heterogeneous selection pressure at amino acid sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Within- and between-species DNA sequence variation and the 'footprint' of natural selection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Positive Darwinian selection after gene duplication in primate ribonuclease genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Episodic adaptive evolution of primate lysozymes.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=552944

Statistical methods for detecting molecular adaptation

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500371102

Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500371102

Rapid evolution by positive Darwinian selection in the extracellular domain of the abundant lymphocyte protein CD45 in primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500371102

Evolutionary diversification of multigene families: allelic selection of toxins in predatory cone snails.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500371102

Adaptive evolution of scorpion sodium channel toxins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500371102

Accuracy and power of bayes prediction of amino acid sites under positive selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500371102

A method for detecting positive selection at single amino acid sites

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15728394

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0500371102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

15728394