DNA twisting flexibility and the formation of sharply looped protein-DNA complexes (Q33928580)

30 July 2017

title

DNA twisting flexibility and the formation of sharply looped protein-DNA complexes (English)

1 reference

30 July 2017

T E Cloutier

1

1 reference

30 July 2017

J Widom

series ordinal

2

1 reference

30 July 2017

language of work or name

English

0 references

publication date

17 February 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

1 reference

30 July 2017

volume

102

1 reference

30 July 2017

issue

10

1 reference

30 July 2017

page(s)

3645-3650

1 reference

DNA trajectory in the Gal repressosome

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Structural transitions and elasticity from torque measurements on DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

The structure of DNA in the nucleosome core

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Role of DNA sequence in nucleosome stability and dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

The role of rigidity in DNA looping-unlooping by AraC

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

A closer view of the conformation of the Lac repressor bound to operator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Action at a distance: DNA-looping and initiation of transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Detection of localized DNA flexibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

A multimerizing transcription factor of sea urchin embryos capable of looping DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

The role of a positioned nucleosome at the Drosophila melanogaster hsp26 promoter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

The effects of sequence context on base dynamics at TpA steps in DNA studied by NMR.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Energetics of DNA twisting. I. Relation between twist and cyclization probability.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

DNA flexibility studied by covalent closure of short fragments into circles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

DNA supercoiling promotes formation of a bent repression loop in lac DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Energetic coupling between DNA bending and base pair opening

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Requirement of stereospecific alignments for initiation from the simian virus 40 early promoter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Transcriptional activation of the Klebsiella pneumoniae nifLA promoter by NTRC is face-of-the-helix dependent and the activator stabilizes the interaction of sigma 54-RNA polymerase with the promoter.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

In vivo DNA loops in araCBAD: size limits and helical repeat

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

Transcriptional control--lessons from an E. coli promoter data base

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

DNA looping between sites for transcriptional activation: self-association of DNA-bound Sp1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

DNA bending, flexibility, and helical repeat by cyclization kinetics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553319

DNA looping and physical constraints on transcription regulation.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

Going the distance: a current view of enhancer action

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

DNA-looping by RXR tetramers permits transcriptional regulation "at a distance".

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

In vivo thermodynamic analysis of repression with and without looping in lac constructs. Estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

Periodic interactions of heat shock transcriptional elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

Spontaneous sharp bending of double-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

Mechanism of transcriptional silencing in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409059102

Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. I. Computational analysis

21 January 2018

1 reference

12 December 2020

Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat

1 reference

12 December 2020

1 reference

12 December 2020

Studies of base pair kinetics by NMR measurement of proton exchange

1 reference

12 December 2020

Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator

1 reference

12 December 2020

DNA distortion as a factor in nucleosome positioning

1 reference

12 December 2020

The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme

1 reference

12 December 2020

Contribution of the intrinsic curvature to measured DNA persistence length

1 reference

12 December 2020

Localized single-stranded bubble mechanism for cyclization of short double helix DNA

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0409059102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference