A thermodynamic framework for Mg2+ binding to RNA. (Q33947784)

30 July 2017

A thermodynamic framework for Mg2+ binding to RNA. (English)

1 reference

30 July 2017

V K Misra

1

1 reference

PubMed ID

11675490

30 July 2017

D E Draper

series ordinal

2

1 reference

PubMed ID

11675490

30 July 2017

language of work or name

English

0 references

publication date

1 October 2001

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

98

1 reference

30 July 2017

22

1 reference

30 July 2017

12456-12461

1 reference

Cation selective glass electrodes and their mode of operation

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Structure and thermodynamics of RNA-protein binding: using molecular dynamics and free energy analyses to calculate the free energies of binding and conformational change

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

5 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Structure and thermodynamics of metal binding in the P5 helix of a group I intron ribozyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

On the role of magnesium ions in RNA stability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Crystal structure of a conserved ribosomal protein-RNA complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Electrostatic contributions to the binding free energy of the lambdacI repressor to DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Classical electrostatics in biology and chemistry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

On the magnitude of the electrostatic contribution to ligand-DNA interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Salt effects on ligand-DNA binding. Minor groove binding antibiotics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Thermodynamics of RNA folding in a conserved ribosomal RNA domain.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Ionic selectivity revisited: The role of kinetic and equilibrium processes in ion permeation through channels

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Calculation of the total electrostatic energy of a macromolecular system: solvation energies, binding energies, and conformational analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Electrical potential of transfer RNAs: codon-anticodon recognition.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Electrostatic interactions in macromolecules: theory and applications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.221234598

The interpretation of Mg(2+) binding isotherms for nucleic acids using Poisson-Boltzmann theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.221234598

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.221234598

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.221234598

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.221234598

Specific ammonium ion requirement for functional ribosomal RNA tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.221234598

Salt effects on polyelectrolyte-ligand binding: comparison of Poisson-Boltzmann, and limiting law/counterion binding models

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

The dielectric constant of a folded protein

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60075

Loss of translational entropy in binding, folding, and catalysis

29 October 2018

1 reference

12 December 2020

Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure

1 reference

12 December 2020

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

1 reference

12 December 2020

Stabilization of RNA tertiary structure by monovalent cations

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.221234598

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

11675490