Mutational and fitness landscapes of an RNA virus revealed through population sequencing (Q33953331)

30 July 2017

Mutational and fitness landscapes of an RNA virus revealed through population sequencing (English)

1 reference

30 July 2017

3

Raul Andino

1 reference

30 July 2017

Ashley Acevedo

1

1 reference

30 July 2017

Leonid Brodsky

series ordinal

2

1 reference

30 July 2017

language of work or name

English

0 references

publication date

27 November 2013

1 reference

30 July 2017

1 reference

30 July 2017

505

1 reference

30 July 2017

7485

1 reference

30 July 2017

686-690

1 reference

https://scigraph.springernature.com/pub.10.1038/nature12861

30 July 2017

0 references

cites work

High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Application of next-generation sequencing technologies in virology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Fast gapped-read alignment with Bowtie 2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Global landscape of HIV-human protein complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Protein dynamism and evolvability.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Virus attenuation by genome-scale changes in codon pair bias

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

The distribution of fitness effects of new mutations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Biochemical characterization of the fidelity of poliovirus RNA-dependent RNA polymerase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

UCSF Chimera--a visualization system for exploratory research and analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mg2+.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Dollo on Dollo's law: irreversibility and the status of evolutionary laws

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Oligomeric structures of poliovirus polymerase are important for function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Evolvability of an RNA virus is determined by its mutational neighbourhood

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Poliovirus requires a precise 5' end for efficient positive-strand RNA synthesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Mutations in the poliovirus 3CD proteinase S1-specificity pocket affect substrate recognition and RNA binding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Fitness of RNA virus decreased by Muller's ratchet

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Site-directed mutagenesis of the putative catalytic triad of poliovirus 3C proteinase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Determinants of substrate recognition by poliovirus 2A proteinase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Nucleotide sequence heterogeneity of an RNA phage population.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

The fitness effects of synonymous mutations in DNA and RNA viruses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

RNA virus error catastrophe: direct molecular test by using ribavirin

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

The rate of adaptation in asexuals

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

Genetic analysis of poliovirus protein 3A: characterization of a non-cytopathic mutant virus defective in killing Vero cells

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4111796

A genetic locus in mutant poliovirus genomes involved in overproduction of RNA polymerase and 3C proteinase

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24284629

12 December 2020

inferred from PubMed ID database lookup

A role for 3AB protein in poliovirus genome replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24284629

12 December 2020

inferred from PubMed ID database lookup

A Mathematical Theory of Natural and Artificial Selection, Part V: Selection and Mutation

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE12861

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE12861

1 reference

Dimensions Publication ID

30 July 2017

1036131980

0 references

Fatcat ID

release_23wc6ybjd5f77ilondzirewepa

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/23wc6ybjd5f77ilondzirewepa

24 November 2022

mapped directly with Wikidata item

PMCID

4111796

1 reference

30 July 2017

1 reference