Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex (Q33957853)

30 July 2017

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex (English)

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30 July 2017

Achillefs N Kapanidis

6

object named as

Achillefs N Kapanidis

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30 July 2017

3

Jayanta Mukhopadhyay

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30 July 2017

Vladimir Mekler

1

1 reference

30 July 2017

Ekaterine Kortkhonjia

2

1 reference

30 July 2017

Jennifer Knight

4

1 reference

30 July 2017

Andrei Revyakin

5

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30 July 2017

Wei Niu

7

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30 July 2017

Yon W Ebright

8

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30 July 2017

Ronald Levy

9

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30 July 2017

Richard H Ebright

10

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30 July 2017

language of work or name

English

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publication date

1 March 2002

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30 July 2017

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30 July 2017

108

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30 July 2017

5

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30 July 2017

599-614

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Mutations in sigma factor that affect the temperature dependence of transcription from a promoter, but not from a mismatch bubble in double-stranded DNA.

30 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Mutational analysis of beta '260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Introduction of unnatural amino acids into proteins using expressed protein ligation

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Structure of the Escherichia coli response regulator NarL

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Organization of open complexes at Escherichia coli promoters. Location of promoter DNA sites close to region 2.5 of the sigma70 subunit of RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving polymin P precipitation and DNA-cellulose chromatography

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

TATA box mimicry by TFIID: autoinhibition of pol II transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Conformation and DNA binding properties of a single-stranded DNA binding region of sigma 70 subunit from Escherichia coli RNA polymerase are modulated by an interaction with the core enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Conformational changes of Escherichia coli RNA polymerase sigma70 factor induced by binding to the core enzyme

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Characterization of ribonucleic acid polymerase-T7 promoter binary complexes

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

FLUORESCENCE POLARIZATION: MEASUREMENT WITH ULTRAVIOLET-POLARIZING FILTERS IN A SPECTROPHOTOFLUOROMETER

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Protein splicing involving the Saccharomyces cerevisiae VMA intein. The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Escherichia coli rpoC397 encodes a temperature-sensitive C-terminal frameshift in the beta' subunit of RNA polymerase that blocks growth of bacteriophage P2

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Fluorescence resonance energy transfer and nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Two amino acids in an RNA polymerase sigma factor involved in the recognition of adjacent base pairs in the -10 region of a cognate promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Interactions of Escherichia coli sigma(70) within the transcription elongation complex

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

RNA polymerase-promoter interactions: the comings and goings of RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Dispersion on a Sphere

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Zwischenmolekulare Energiewanderung und Fluoreszenz

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

The functional and regulatory roles of sigma factors in transcription

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

sigma factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

The delta subunit of Bacillus subtilis RNA polymerase. An allosteric effector of the initiation and core-recycling phases of transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

A structural model of transcription elongation

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Characterization of the Escherichia coli transcription factor sigma 70: localization of a region involved in the interaction with core RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

A simplified representation of protein conformations for rapid simulation of protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Fluorescence resonance energy transfer as a structural tool for nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase sigma70 subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Equation of State Calculations by Fast Computing Machines

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Bacterial RNA polymerase subunit and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Expressed protein ligation: a general method for protein engineering

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Structural organization of the RNA polymerase-promoter open complex

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Mapping the promoter DNA sites proximal to conserved regions of sigma 70 in an Escherichia coli RNA polymerase-lacUV5 open promoter complex

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Mapping the sigma70 subunit contact sites on Escherichia coli RNA polymerase with a sigma70-conjugated chemical protease

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

The renaissance of fluorescence resonance energy transfer

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Assembly of functional Escherichia coli RNA polymerase containing beta subunit fragments

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Tethering of the large subunits of Escherichia coli RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized

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https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Roles of Mg2+ in the mechanism of formation and dissociation of open complexes between Escherichia coli RNA polymerase and the lambda PR promoter: kinetic evidence for a second open complex requiring Mg2+

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Location, structure, and function of the target of a transcriptional activator protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Rapid RNA polymerase genetics: one-day, no-column preparation of reconstituted recombinant Escherichia coli RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Mapping protein-protein interactions with a library of tethered cutting reagents: the binding site of sigma 70 on Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Domain 1.1 of the sigma(70) subunit of Escherichia coli RNA polymerase modulates the formation of stable polymerase/promoter complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Changes in conserved region 2 of Escherichia coli sigma 70 affecting promoter recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Region 1 of sigma70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Orientation factor in steady-state and time-resolved resonance energy transfer measurements

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

Principles of Fluorescence Spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0092-8674%2802%2900667-0

7 January 2021

10.1016/S0092-8674(02)00667-0

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DOI

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30 July 2017

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