A survey of green plant tRNA 3'-end processing enzyme tRNase Zs, homologs of the candidate prostate cancer susceptibility protein ELAC2. (Q33968996)

30 July 2017

title

A survey of green plant tRNA 3'-end processing enzyme tRNase Zs, homologs of the candidate prostate cancer susceptibility protein ELAC2. (English)

1 reference

30 July 2017

1 reference

Lijuan Fan

1

1 reference

30 July 2017

Zhikang Wang

2

1 reference

30 July 2017

Jinyu Liu

3

1 reference

30 July 2017

Weili Guo

4

1 reference

30 July 2017

Jie Yan

5

1 reference

30 July 2017

Ying Huang

6

1 reference

30 July 2017

publication date

23 July 2011

1 reference

30 July 2017

published in

BMC Evolutionary Biology

1 reference

30 July 2017

volume

11

1 reference

30 July 2017

page(s)

219

1 reference

3' processing of eukaryotic precursor tRNAs.

30 July 2017

cites work

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A global picture of tRNA genes in plant genomes

5 July 2018

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Identification and analysis of candidate fungal tRNA 3'-end processing endonucleases tRNase Zs, homologs of the putative prostate cancer susceptibility protein ELAC2.

5 July 2018

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tRNA biology charges to the front

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5 July 2018

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5 July 2018

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Effect of changes in the flexible arm on tRNase Z processing kinetics

5 July 2018

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The making of tRNAs and more - RNase P and tRNase Z.

5 July 2018

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The Sorghum bicolor genome and the diversification of grasses

5 July 2018

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3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

5 July 2018

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Regulation of the human tRNase ZS gene expression

5 July 2018

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Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation

5 July 2018

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The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

5 July 2018

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A high quality draft consensus sequence of the genome of a heterozygous grapevine variety

5 July 2018

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5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The structure of the flexible arm ofThermotoga maritimatRNase Z differs from those of homologous enzymes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

tRNase Z catalysis and conserved residues on the carboxy side of the His cluster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

tRNase Z: the end is not in sight

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Nucleases of the metallo-beta-lactamase family and their role in DNA and RNA metabolism

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

When all's zed and done: the structure and function of RNase Z in prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

ELAC2, a putative prostate cancer susceptibility gene product, potentiates TGF-beta/Smad-induced growth arrest of prostate cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Residues in two homology blocks on the amino side of the tRNase Z His domain contribute unexpectedly to pre-tRNA 3' end processing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The crystal structure of the zinc phosphodiesterase from Escherichia coli provides insight into function and cooperativity of tRNase Z-family proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The tRNase Z family of proteins: physiological functions, substrate specificity and structural properties

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The map-based sequence of the rice genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Sequence-dependent cleavage site selection by RNase Z from the cyanobacterium Synechocystis sp. PCC 6803.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

RNA maturation in mitochondria of S. cerevisiae and S. pombe

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Characterization of TRZ1, a yeast homolog of the human candidate prostate cancer susceptibility gene ELAC2 encoding tRNase Z

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Polyploidy and genome evolution in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

ProtTest: selection of best-fit models of protein evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Mechanisms of protein import and routing in chloroplasts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Zinc- and iron-dependent cytosolic metallo-beta-lactamase domain proteins exhibit similar zinc-binding affinities, independent of an atypical glutamate at the metal-binding site.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

A novel endonucleolytic mechanism to generate the CCA 3' termini of tRNA molecules in Thermotoga maritima

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Drosophila RNase Z processes mitochondrial and nuclear pre-tRNA 3' ends in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

MrBayes 3: Bayesian phylogenetic inference under mixed models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

A panoramic view of yeast noncoding RNA processing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The product of the candidate prostate cancer susceptibility gene ELAC2 interacts with the gamma-tubulin complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Assigning a function to a conserved group of proteins: the tRNA 3'-processing enzymes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Expansion of the zinc metallo-hydrolase family of the beta-lactamase fold

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

An evolutionary classification of the metallo-beta-lactamase fold proteins.

5 July 2018

1 reference

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A candidate prostate cancer susceptibility gene at chromosome 17p

5 July 2018

1 reference

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

5 July 2018

1 reference

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The 3' end CCA of mature tRNA is an antideterminant for eukaryotic 3'-tRNase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The yeast La protein is required for the 3' endonucleolytic cleavage that matures tRNA precursors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Distribution of both lengths and 5' terminal nucleotides of mammalian pre-tRNA 3' trailers reflects properties of 3' processing endoribonuclease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Regulation of gene expression in chloroplasts of higher plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Adjustment of the tRNA population to the codon usage in chloroplasts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

The mitochondrial protein import apparatus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Cleavage specificity of chloroplast and nuclear tRNA 3'-processing nucleases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

The Caenorhabditis elegans homolog of the putative prostate cancer susceptibility gene ELAC2, hoe-1, plays a role in germline proliferation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

The fission yeast Schizosaccharomyces pombe has two distinct tRNase Z(L)s encoded by two different genes and differentially targeted to the nucleus and mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Arabidopsis encodes four tRNase Z enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Structural basis for substrate binding, cleavage and allostery in the tRNA maturase RNase Z.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Identification by Mn2+ rescue of two residues essential for the proton transfer of tRNase Z catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Identification of metal binding residues for the binuclear zinc phosphodiesterase reveals identical coordination as glyoxalase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Residues in the conserved His domain of fruit fly tRNase Z that function in catalysis are not involved in substrate recognition or binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Analysis of the functional modules of the tRNA 3' endonuclease (tRNase Z).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Exosite modules guide substrate recognition in the ZiPD/ElaC protein family

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

The flexible arm of tRNase Z is not essential for pre-tRNA binding but affects cleavage site selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

The La protein in Schizosaccharomyces pombe: a conserved yet dispensable phosphoprotein that functions in tRNA maturation.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161902

Crystal Structure of the tRNA 3′ Processing Endoribonuclease tRNase Z fromThermotoga maritima

29 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

Foxtail millet: a sequence-driven grass model system

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-219

The RNase Z homologue encoded by Escherichia coli elaC gene is RNase BN

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21781332

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Effects of conserved D/T loop substitutions in the pre-tRNA substrate on tRNase Z catalysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21781332

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recombinant RNase Z Does Not Recognize CCA as Part of the tRNA and Its Cleavage Efficieny Is Influenced by Acceptor Stem Length

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21781332

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-11-219

1 reference

Dimensions Publication ID

30 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-219

9 September 2019

1 reference

30 July 2017

1 reference