Improved quality control processing of peptide-centric LC-MS proteomics data (Q33996476)

30 July 2017

Improved quality control processing of peptide-centric LC-MS proteomics data (English)

1 reference

30 July 2017

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Thomas O Metz

3

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Joel G. Pounds

Joel G Pounds

7

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Katrina M. Waters

Katrina M Waters

2

0 references

Ralph S. Baric

6

Ralph S Baric

1 reference

30 July 2017

5

Amy C Sims

1 reference

30 July 2017

1

Melissa M Matzke

1 reference

30 July 2017

4

Jon M Jacobs

1 reference

PubMed ID

21852304

30 July 2017

Bobbie-Jo Webb-Robertson

8

Bobbie-Jo M Webb-Robertson

1 reference

PubMed ID

21852304

30 July 2017

language of work or name

English

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publication date

18 August 2011

1 reference

30 July 2017

1 reference

30 July 2017

27

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30 July 2017

20

1 reference

30 July 2017

2866-2872

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

30 July 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

A recursive version of Grubbs' test for detecting multiple outliers in environmental and chemical data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

A statistical framework for protein quantitation in bottom-up MS-based proteomics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Statistical design of quantitative mass spectrometry-based proteomic experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

arrayQualityMetrics--a bioconductor package for quality assessment of microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Information quality in proteomics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

OutlierD: an R package for outlier detection using quantile regression on mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Statistical analysis of relative labeled mass spectrometry data from complex samples using ANOVA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

VIPER: an advanced software package to support high-throughput LC-MS peptide identification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

arrayQCplot: software for checking the quality of microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Estimating probabilities of peptide database identifications to LC-FTICR-MS observations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Predicting gene function through systematic analysis and quality assessment of high-throughput data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

A correlation algorithm for the automated quantitative analysis of shotgun proteomics data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187650

Design and analysis of quantitative differential proteomics investigations using LC-MS technology.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR479

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR479

Mixed-Effects Statistical Model for Comparative LC−MS Proteomics Studies†

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR479

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21852304

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTR479

1 reference

journals/bioinformatics/MatzkeWMJSBPW11

30 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference

PubMed ID

21852304