Computation-directed identification of OxyR DNA binding sites in Escherichia coli (Q33996659)

30 July 2017

Computation-directed identification of OxyR DNA binding sites in Escherichia coli (English)

1 reference

30 July 2017

1 reference

computational biology

1 reference

Zheng M

1

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30 July 2017

Wang X

2

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30 July 2017

Doan B

3

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30 July 2017

Lewis KA

4

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30 July 2017

Schneider TD

5

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30 July 2017

Storz G

6

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30 July 2017

language of work or name

English

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publication date

1 August 2001

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30 July 2017

Journal of Bacteriology

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30 July 2017

183

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30 July 2017

15

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30 July 2017

4571-4579

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DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Electron avenue: pathways of disulfide bond formation and isomerization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

OxyR and SoxRS regulation of fur

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

In vivo transcription of the Escherichia coli oxyR regulon as a function of growth phase and in response to oxidative stress

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

FhuF, an iron-regulated protein of Escherichia coli with a new type of [2Fe-2S] center

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

The functional properties of DsbG, a thiol-disulfide oxidoreductase from the periplasm of Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Activation of the OxyR transcription factor by reversible disulfide bond formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

A new Escherichia coli gene, dsbG, encodes a periplasmic protein involved in disulphide bond formation, required for recycling DsbA/DsbB and DsbC redox proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

The complete genome sequence of Escherichia coli K-12

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Reading of DNA sequence logos: prediction of major groove binding by information theory.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: a mechanism for differential promoter selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for oxidation and transcriptional activation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Identification and molecular analysis of oxyR-regulated promoters important for the bacterial adaptation to oxidative stress

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Thioredoxin 2 is involved in the oxidative stress response in Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

Information content of individual genetic sequences.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=95352

In vivo and in vitro function of the Escherichia coli periplasmic cysteine oxidoreductase DsbG

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11443092

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DsbG, a protein disulfide isomerase with chaperone activity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11443092

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JB.183.15.4571-4579.2001

1 reference

30 July 2017

1 reference

30 July 2017

1 reference