Identification and targeted cultivation of abundant novel freshwater sphingomonads and analysis of their population substructure (Q34004506)

30 July 2017

Identification and targeted cultivation of abundant novel freshwater sphingomonads and analysis of their population substructure (English)

1 reference

30 July 2017

0 references

4

Boyke Bunk

1 reference

30 July 2017

6

Jörg Overmann

1 reference

30 July 2017

5

Johannes Sikorski

1 reference

30 July 2017

Mareike Jogler

1

1 reference

30 July 2017

Helge Siemens

series ordinal

2

1 reference

30 July 2017

Hong Chen

series ordinal

3

1 reference

30 July 2017

language of work or name

English

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publication date

26 August 2011

1 reference

Applied and Environmental Microbiology

30 July 2017

1 reference

30 July 2017

77

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30 July 2017

20

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30 July 2017

7355-7364

1 reference

describes a project that uses

30 July 2017

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=3194862

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Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12).

5 July 2018

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Ubiquity of Polynucleobacter necessarius subspecies asymbioticus results from ecological diversification

5 July 2018

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Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline siliceous hot spring microbial mat.

5 July 2018

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Ecology of speciation in the genus Bacillus

5 July 2018

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5 July 2018

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The alpha-proteobacteria: the Darwin finches of the bacterial world

5 July 2018

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5 July 2018

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Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus

5 July 2018

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Carbon source utilization patterns of Bacillus simplex ecotypes do not reflect their adaptation to ecologically divergent slopes in 'Evolution Canyon', Israel

5 July 2018

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Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics

5 July 2018

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High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11).

5 July 2018

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Sphingomonas kaistensis sp. nov., a novel alphaproteobacterium containing pufLM genes

5 July 2018

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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

5 July 2018

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Recombination and the nature of bacterial speciation

5 July 2018

1 reference

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Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean.

5 July 2018

1 reference

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Sandarakinorhabdus limnophila gen. nov., sp. nov., a novel bacteriochlorophyll a-containing, obligately aerobic bacterium isolated from freshwater lakes

5 July 2018

1 reference

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Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization.

5 July 2018

1 reference

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Responses to Stress and Nutrient Availability by the Marine Ultramicrobacterium Sphingomonas sp. Strain RB2256

5 July 2018

1 reference

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Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies.

5 July 2018

1 reference

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Specific detection, isolation, and characterization of selected, previously uncultured members of the freshwater bacterioplankton community

5 July 2018

1 reference

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Diversity of the human intestinal microbial flora

5 July 2018

1 reference

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Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

5 July 2018

1 reference

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Representative freshwater bacterioplankton isolated from Crater Lake, Oregon

5 July 2018

1 reference

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Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton

5 July 2018

1 reference

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Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Fine-scale phylogenetic architecture of a complex bacterial community.

5 July 2018

1 reference

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Diversity and dynamics of a north atlantic coastal Vibrio community.

5 July 2018

1 reference

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ARB: a software environment for sequence data

5 July 2018

1 reference

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Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

5 July 2018

1 reference

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Wide geographic distribution of bacteriophages that lyse the same indigenous freshwater isolate (Sphingomonas sp. strain B18).

5 July 2018

1 reference

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Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplankton

5 July 2018

1 reference

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Differential growth response of colony-forming alpha- and gamma-proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the eastern Mediterranean Sea, and the Gulf of Eilat

5 July 2018

1 reference

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Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.

5 July 2018

1 reference

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Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

What are bacterial species?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Sphingomonas alaskensis sp. nov., a dominant bacterium from a marine oligotrophic environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Alpha- and beta-Proteobacteria control the consumption and release of amino acids on lake snow aggregates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

The species concept for prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Adapt globally, act locally: the effect of selective sweeps on bacterial sequence diversity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Microbial ecology and evolution: a ribosomal RNA approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Large-scale distribution and activity patterns of an extremely low-light-adapted population of green sulfur bacteria in the Black Sea.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

A novel approach for high throughput cultivation assays and the isolation of planktonic bacteria

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

The ecological niche of the consortium "Pelochromatium roseum"

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3194862

29 October 2018

1 reference

12 December 2020

Phylogeny and molecular fingerprinting of green sulfur bacteria

1 reference

12 December 2020

Antibiotic effects of three strains of chrysophytes (Ochromonas, Poterioochromonas) on freshwater bacterial isolates

1 reference

12 December 2020

The 16s/23s ribosomal spacer region as a target for DNA probes to identify eubacteria

1 reference

12 December 2020

Optimization of the polymerase chain reaction with regard to fidelity: modified T7, Taq, and vent DNA polymerases

1 reference

12 December 2020

Identifiers

DOI

10.1128/AEM.05832-11

1 reference

30 July 2017

1 reference

30 July 2017

1 reference