Selection of organisms for the co-evolution-based study of protein interactions (Q34017079)

30 July 2017

title

Selection of organisms for the co-evolution-based study of protein interactions (English)

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30 July 2017

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5

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David Ochoa

2

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David Juan

object named as

David Juan

3

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author name string

Dorota Herman

1

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30 July 2017

Daniel Lopez

4

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Florencio Pazos

6

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30 July 2017

publication date

12 September 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

363

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Measuring the evolutionary rewiring of biological networks

30 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Protein co-evolution, co-adaptation and interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Predicting biological networks from genomic data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Co-evolution and co-adaptation in protein networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Predicting protein domain interactions from coevolution of conserved regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Protein-protein interactions more conserved within species than across species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

EcoCyc: a comprehensive database resource for Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Multiple sequence alignment with the Clustal series of programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

MinDE-dependent pole-to-pole oscillation of division inhibitor MinC in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179974

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-363

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-363

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-363

Refined phylogenetic profiles method for predicting protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-363

MPIDB: the microbial protein interaction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-363

The Relationship Between Sequence and Interaction Divergence in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-363

Studying the co-evolution of protein families with the Mirrortree web server

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21910884

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-363

1 reference

journals/bmcbi/HermanOJLVP11

30 July 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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30 July 2017

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