Fold prediction of helical proteins using torsion angle dynamics and predicted restraints (Q34019190)

30 July 2017

Fold prediction of helical proteins using torsion angle dynamics and predicted restraints (English)

1 reference

30 July 2017

0 references

3

Sung-Hou Kim

1 reference

30 July 2017

2

Jingtong Hou

1 reference

30 July 2017

1

Chao Zhang

1 reference

PubMed ID

11904420

30 July 2017

language of work or name

English

0 references

publication date

1 March 2002

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

99

1 reference

30 July 2017

6

1 reference

30 July 2017

3581-3585

1 reference

Structural genomics of microbes: an objective

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Environment-dependent residue contact energies for proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Protein secondary structure prediction based on position-specific scoring matrices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Structure calculation of biological macromolecules from NMR data.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Protein distance constraints predicted by neural networks and probability density functions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Torsion angle dynamics for NMR structure calculation with the new program DYANA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Helix packing angle preferences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

The NMR solution structure of intestinal fatty acid-binding protein complexed with palmitate: application of a novel distance geometry algorithm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

The prediction of protein contacts from multiple sequence alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Structure-derived potentials and protein simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Compensating changes in protein multiple sequence alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

SCOP: a structural classification of proteins database for the investigation of sequences and structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Predicting the helix packing of globular proteins by self-correcting distance geometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Distance constraints on macromolecular conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122566

Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.052003799

The packing of α-helices: simple coiled-coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.052003799

Improving contact predictions by the combination of correlated mutations and other sources of sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.052003799

A Fast Recursive Algorithm for Molecular Dynamics Simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.052003799

21 January 2018

Identifiers

DOI

10.1073/PNAS.052003799

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

11904420