Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids (Q34024751)

30 July 2017

title

Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids (English)

1 reference

30 July 2017

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Javier Arsuaga

1

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30 July 2017

Mariel Vázquez

2

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30 July 2017

Sonia Trigueros

3

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30 July 2017

De Witt Sumners

4

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30 July 2017

Joaquim Roca

5

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30 July 2017

language of work or name

English

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publication date

1 April 2002

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

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30 July 2017

volume

99

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30 July 2017

issue

8

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30 July 2017

page(s)

5373-5377

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Sedimentation and electrophoretic migration of DNA knots and catenanes

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Encapsidated conformation of bacteriophage T7 DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Simplification of DNA topology below equilibrium values by type II topoisomerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Double-stranded DNA organization in bacteriophage heads: an alternative toroid-based model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Probability of DNA knotting and the effective diameter of the DNA double helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Knotting of a DNA chain during ring closure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Mechanisms of genome propagation and helper exploitation by satellite phage P4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Electron microscopic studies of the different topological forms of the cauliflower mosaic virus DNA: knotted encapsidated DNA and nuclear minichromosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Knotted DNA from bacteriophage capsids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Novel topologically knotted DNA from bacteriophage P4 capsids: studies with DNA topoisomerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

On the sequence similarity of the cohesive ends of coliphage P4, P2, and 186 deoxyribonucleic acid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Location of DNA ends in P2, 186, P4 and lambda bacteriophage heads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Analysis of spontaneous deletion mutants of satellite bacteriophage P4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Torsional and bending rigidity of the double helix from data on small DNA rings

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Knotting of DNA molecules isolated from deletion mutants of intact bacteriophage P4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Ion etching bacteriophage T4: support for a spiral-fold model of packaged DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

The stereostructure of knots and catenanes produced by phage lambda integrative recombination: implications for mechanism and DNA structure.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Biochemical topology: applications to DNA recombination and replication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Increased production of a knotted form of plasmid pBR322 DNA in Escherichia coli DNA topoisomerase mutants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Site-specific recombination by Tn3 resolvase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Conformation of DNA packaged in bacteriophage T7. Analysis by use of ultraviolet light-induced DNA-capsid cross-linking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Trefoil knotting revealed by molecular dynamics simulations of supercoiled DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Secondary structure and interactions of the packaged dsDNA genome of bacteriophage P22 investigated by Raman difference spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Statistical mechanics and topology of polymer chains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

DNA arrangement in isometric phage heads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122776

Equation of State Calculations by Fast Computing Machines

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032095099

Geometry and physics of knots

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032095099

Classification of knot projections

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032095099

Four-thirds power law for knots and links

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032095099

Knotting and supercoiling in circular DNA: A model incorporating the effect of added salt

21 January 2018

1 reference

12 December 2020

Testing models of the arrangement of DNA inside bacteriophage λ by crosslinking the packaged DNA

1 reference

12 December 2020

Inducible overexpression, purification, and active site mapping of DNA topoisomerase II from the yeast Saccharomyces cerevisiae

1 reference

12 December 2020

Bacteriophage P2 and P4 morphogenesis: structure and function of the connector

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.032095099

1 reference

release_gkojqmnrubeyvmcmzcnfrtjsb4

30 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gkojqmnrubeyvmcmzcnfrtjsb4

24 November 2022

mapped directly with Wikidata item

PMC publication ID

122776

1 reference

30 July 2017

1 reference