Exon-level microarray analyses identify alternative splicing programs in breast cancer (Q34027831)

30 July 2017

Exon-level microarray analyses identify alternative splicing programs in breast cancer (English)

1 reference

alternative mRNA splicing, via spliceosome

30 July 2017

1 reference

1 reference

9

Lior Pachter

0 references

Bahram Parvin

12

0 references

Terry Speed

14

object named as

Terence Speed

1 reference

30 July 2017

Sanchita Bhattacharyaa

5

object named as

Sanchita Bhattacharya

1 reference

30 July 2017

25

Joe W Gray

1 reference

30 July 2017

23

Paul Spellman

1 reference

30 July 2017

Anna Lapuk

1

1 reference

30 July 2017

Henry Marr

2

1 reference

30 July 2017

Lakshmi Jakkula

3

1 reference

30 July 2017

Helder Pedro

4

1 reference

30 July 2017

Elizabeth Purdom

6

1 reference

30 July 2017

Zhi Hu

7

1 reference

30 July 2017

Ken Simpson

8

1 reference

30 July 2017

Steffen Durinck

10

1 reference

30 July 2017

Nicholas Wang

11

1 reference

30 July 2017

Gerald Fontenay

13

1 reference

30 July 2017

James Garbe

15

1 reference

30 July 2017

Martha Stampfer

16

1 reference

30 July 2017

Hovig Bayandorian

17

1 reference

30 July 2017

Shannon Dorton

18

1 reference

30 July 2017

Tyson A Clark

19

1 reference

30 July 2017

Anthony Schweitzer

20

1 reference

30 July 2017

Andrew Wyrobek

21

1 reference

30 July 2017

Heidi Feiler

22

1 reference

30 July 2017

John Conboy

24

1 reference

30 July 2017

6 July 2010

1 reference

Molecular Cancer Research

30 July 2017

1 reference

30 July 2017

8

1 reference

30 July 2017

961-974

1 reference

30 July 2017

7

1 reference

Deconstructing the molecular portraits of breast cancer

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Molecular distinctions between stasis and telomere attrition senescence barriers shown by long-term culture of normal human mammary epithelial cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Using high-density exon arrays to profile gene expression in closely related species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Cancer-associated regulation of alternative splicing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Characterization of a naturally occurring breast cancer subset enriched in epithelial-to-mesenchymal transition and stem cell characteristics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Alternative isoform regulation in human tissue transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

DAVID gene ID conversion tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

FIRMA: a method for detection of alternative splicing from exon array data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Implications of the cancer stem-cell hypothesis for breast cancer prevention and therapy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

The morphologies of breast cancer cell lines in three-dimensional assays correlate with their profiles of gene expression.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Alternative splicing, gene duplication and connectivity in the genetic interaction network of the nematode worm Caenorhabditis elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Discovery of tissue-specific exons using comprehensive human exon microarrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Alternative splicing: new insights from global analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Unusual intron conservation near tissue-regulated exons found by splicing microarrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Structural genomics analysis of alternative splicing and application to isoform structure modeling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Detecting tissue-specific regulation of alternative splicing as a qualitative change in microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Aberrant and alternative splicing in cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Comprehensive comparison of six microarray technologies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

DAVID: Database for Annotation, Visualization, and Integrated Discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Molecular portraits of human breast tumours

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Primer3 on the WWW for general users and for biologist programmers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911965

Identification of alternative splicing markers for breast cancer

5 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20605923

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An intronic downstream enhancer promotes 3' splice site usage of a neural cell-specific exon

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20605923

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

WITHDRAWN: Deconstructing the molecular portraits of breast cancer

1 reference

3 January 2024

https://opencitations.net/index/api/v1/citations/10.1016/J.MOLONC.2010.04.003

Identifiers

DOI

10.1158/1541-7786.MCR-09-0528

1 reference

30 July 2017

1 reference

30 July 2017

1 reference