RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information (Q34040117)

30 July 2017

title

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information (English)

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30 July 2017

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Manabu Torii

1

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Cecilia Arighi

object named as

Cecilia N Arighi

7

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Cathy H. Wu

10

object named as

Cathy H Wu

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30 July 2017

4

Rose Oughtred

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30 July 2017

8

Hongzhan Huang

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30 July 2017

Gang Li

2

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30 July 2017

Zhiwen Li

3

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30 July 2017

Francesca Diella

5

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30 July 2017

Irem Celen

6

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30 July 2017

K Vijay-Shanker

9

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30 July 2017

publication date

13 August 2014

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30 July 2017

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30 July 2017

volume

2014

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Protein Ontology: a controlled structured network of protein entities

30 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Activities at the Universal Protein Resource (UniProt)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

BioC: a minimalist approach to interoperability for biomedical text processing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

The eFIP system for text mining of protein interaction networks of phosphorylated proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Text mining for the biocuration workflow

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Targeting the human kinome for cancer therapy: current perspectives

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Cross-species gene normalization by species inference

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Phospho.ELM: a database of phosphorylation sites--update 2011

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Kinome signaling through regulated protein-protein interactions in normal and cancer cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Balancing cell adhesion and Wnt signaling, the key role of beta-catenin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Literature mining and database annotation of protein phosphorylation using a rule-based system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

iProLINK: an integrated protein resource for literature mining

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

The Protein Information Resource

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

eFIP: a tool for mining functional impact of phosphorylation from literature

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131691

Beyond the clause: extraction of phosphorylation information from medline abstracts

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25122463

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DATABASE/BAU081

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30 July 2017

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30 July 2017

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