Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments (Q34045498)

30 July 2017

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments (English)

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30 July 2017

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Holly M Bik

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Axayácatl Rocha-Olivares

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Axayácatl Rocha-Olivares

6

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author name string

Way Sung

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30 July 2017

Paul De Ley

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30 July 2017

James G Baldwin

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30 July 2017

Jyotsna Sharma

5

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30 July 2017

W Kelley Thomas

7

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30 July 2017

10 October 2011

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30 July 2017

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30 July 2017

21

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5

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30 July 2017

1048-1059

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Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally.

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Acoelomorph flatworms are deuterostomes related to Xenoturbella

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Removing noise from pyrosequenced amplicons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Second-generation environmental sequencing unmasks marine metazoan biodiversity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

QIIME allows analysis of high-throughput community sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Assessing the root of bilaterian animals with scalable phylogenomic methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Global isolation by distance despite strong regional phylogeography in a small metazoan.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Bipolar gene flow in deep-sea benthic foraminifera

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

The nineteenth century roots of 'everything is everywhere'.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Microbial diversity in the deep sea and the underexplored "rare biosphere"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Aerobiology and the global transport of desert dust

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Dispersal limitations matter for microbial morphospecies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

ARB: a software environment for sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Global dispersal of free-living microbial eukaryote species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

A greedy algorithm for aligning DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

A molecular evolutionary framework for the phylum Nematoda

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

Gnathostomulida--an enigmatic metazoan phylum from both morphological and molecular perspectives

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261328

DNA sequence quality trimming and vector removal.

5 July 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Phylogeography of the Rhabditis (Pellioditis) marina species complex: evidence for long-distance dispersal, and for range expansions and restricted gene flow in the northeast Atlantic.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Molecular evidence for broad-scale distributions in bdelloid rotifers: everything is not everywhere but most things are very widespread

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Linking operational clustered taxonomic units (OCTUs) from parallel ultra sequencing (PUS) to nematode species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

New data from an enigmatic phylum: evidence from molecular sequence data supports a sister-group relationship between Loricifera and Nematomorpha

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Bathymetric zonation and diversity gradient of gastropods and bivalves in West Antarctica from the South Shetland Islands to the Bellingshausen Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Patterns of diversity in microscopic animals: are they comparable to those in protists or in larger animals?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Local biodiversity patterns in micrometazoans: Are tardigrades everywhere?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

Nematode diversity and its relation to the quantity and quality of sedimentary organic matter in the deep Nazaré Canyon, Western Iberian Margin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05297.X

10.1111/J.1365-294X.2011.05297.X

21 January 2018

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DOI

1 reference

30 July 2017

1 reference

30 July 2017

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