Replica exchange with solute tempering: a method for sampling biological systems in explicit water (Q34048139)

30 July 2017

Replica exchange with solute tempering: a method for sampling biological systems in explicit water (English)

1 reference

30 July 2017

Pu Liu

1

1 reference

30 July 2017

Byungchan Kim

series ordinal

2

1 reference

30 July 2017

Richard A Friesner

series ordinal

3

1 reference

30 July 2017

B J Berne

series ordinal

4

1 reference

30 July 2017

language of work or name

English

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publication date

19 September 2005

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

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30 July 2017

102

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30 July 2017

39

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30 July 2017

13749-13754

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Modified replica exchange simulation methods for local structure refinement

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236566

Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236566

Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236566

Dihedral angles of tripeptides in solution directly determined by polarized Raman and FTIR spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236566

Catalytic tempering: A method for sampling rough energy landscapes by Monte Carlo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236566

Novel methods of sampling phase space in the simulation of biological systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236566

Replica Monte Carlo simulation of spin glasses.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506346102

Replica-exchange method using the generalized effective potential.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506346102

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506346102

Rattle: A “velocity” version of the shake algorithm for molecular dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506346102

Replica-exchange multicanonical algorithm and multicanonical replica-exchange method for simulating systems with rough energy landscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506346102

Ergodic behavior in supercooled liquids and in glasses

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16172406

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Reversible temperature and pressure denaturation of a protein fragment: a replica exchange molecular dynamics simulation study

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16172406

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0506346102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference