Long-range DNase I hypersensitivity mapping reveals the imprinted Igf2r and Air promoters share cis-regulatory elements. (Q34056081)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16204191%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

title

Long-range DNase I hypersensitivity mapping reveals the imprinted Igf2r and Air promoters share cis-regulatory elements (English)

1 reference

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7 January 2020

main subject

cis-regulatory element

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2

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7 January 2020

author name string

Florian M Pauler

series ordinal

1

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7 January 2020

Katarzyna E Warczok

series ordinal

3

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7 January 2020

Denise P Barlow

series ordinal

4

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7 January 2020

publication date

1 October 2005

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7 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16204191%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

volume

15

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7 January 2020

issue

10

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7 January 2020

page(s)

1379-1387

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16204191%20AND%20SRC:MED&resulttype=core&format=json

The Air noncoding RNA: an imprinted cis-silencing transcript

7 January 2020

cites work

1 reference

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Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping

28 July 2018

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Long-range comparison of human and mouse Sprr loci to identify conserved noncoding sequences involved in coordinate regulation

28 July 2018

1 reference

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Epigenetic regulation of mammalian genomic imprinting

28 July 2018

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Applied bioinformatics for the identification of regulatory elements

28 July 2018

1 reference

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Genomic imprinting: intricacies of epigenetic regulation in clusters.

28 July 2018

1 reference

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Structure, function and evolution of CpG island promoters

28 July 2018

1 reference

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A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus

28 July 2018

1 reference

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Imprinted silencing of Slc22a2 and Slc22a3 does not need transcriptional overlap between Igf2r and Air.

28 July 2018

1 reference

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Chromatin remodeling as a guide to transcriptional regulatory networks in mammals

28 July 2018

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The imprinting mechanism of the Prader-Willi/Angelman regional control center

28 July 2018

1 reference

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The non-coding Air RNA is required for silencing autosomal imprinted genes

28 July 2018

1 reference

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Quantification of DNaseI-sensitivity by real-time PCR: quantitative analysis of DNaseI-hypersensitivity of the mouse beta-globin LCR

28 July 2018

1 reference

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Investigation of elements sufficient to imprint the mouse Air promoter

28 July 2018

1 reference

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Genomic strategies to identify mammalian regulatory sequences

28 July 2018

1 reference

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VISTA : visualizing global DNA sequence alignments of arbitrary length

28 July 2018

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A skeletal muscle-specific mouse Igf2 repressor lies 40 kb downstream of the gene.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Comparative genomic sequencing identifies novel tissue-specific enhancers and sequence elements for methylation-sensitive factors implicated in Igf2/H19 imprinting

28 July 2018

1 reference

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PipMaker--a web server for aligning two genomic DNA sequences

28 July 2018

1 reference

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The uniqueness of the imprinting mechanism

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Parental allele-specific chromatin configuration in a boundary-imprinting-control element upstream of the mouse H19 gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

In vivo nuclease hypersensitivity studies reveal multiple sites of parental origin-dependent differential chromatin conformation in the 150 kb SNRPN transcription unit

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Multiple imprinted sense and antisense transcripts, differential methylation and tandem repeats in a putative imprinting control region upstream of mouse Igf2.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Role for DNA methylation in genomic imprinting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Comparative analysis of Igf-2/H19 imprinted domain: identification of a highly conserved intergenic DNase I hypersensitive region.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Epigenetic properties and identification of an imprint mark in the Nesp-Gnasxl domain of the mouse Gnas imprinted locus.

28 October 2018

1 reference

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The origins of genomic imprinting in mammals

28 October 2018

1 reference

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Bidirectional action of the Igf2r imprint control element on upstream and downstream imprinted genes

28 October 2018

1 reference

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Divergent evolution in M6P/IGF2R imprinting from the Jurassic to the Quaternary

28 October 2018

1 reference

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Lack of reciprocal genomic imprinting of sense and antisense RNA of mouse insulin-like growth factor II receptor in the central nervous system

28 October 2018

1 reference

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Imprinted expression of the Igf2r gene depends on an intronic CpG island.

28 October 2018

1 reference

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Parental chromosome-specific chromatin conformation in the imprinted U2af1-rs1 gene in the mouse.

28 October 2018

1 reference

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Allele-specific expression and total expression levels of imprinted genes during early mouse development: implications for imprinting mechanisms

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

Maternal-specific methylation of the imprinted mouse Igf2r locus identifies the expressed locus as carrying the imprinting signal.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240080

28 October 2018

1 reference

12 December 2020

The formation and function of DNase I hypersensitive sites in the process of gene activation

1 reference

12 December 2020

The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1

1 reference

12 December 2020

Genetic analysis of the organic cation transporter genes Orct2/Slc22a2 and Orct3/Slc22a3 reduces the critical region for the t haplotype mutant t(w73) to 200 kb

1 reference

12 December 2020

Functional Polymorphism in the Parental Imprinting of the Human IGF2R Gene

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.3783805

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16204191%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16204191%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference