ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets (Q34075847)

30 July 2017

ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets (English)

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30 July 2017

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Jeffrey T Leek

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30 July 2017

2

Ben Langmead

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30 July 2017

Alyssa C Frazee

1

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30 July 2017

16 November 2011

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30 July 2017

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30 July 2017

12

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30 July 2017

449

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https://scigraph.springernature.com/pub.10.1186/1471-2105-12-449

30 July 2017

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Sequencing technology does not eliminate biological variability

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Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

5 July 2018

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The developmental transcriptome of Drosophila melanogaster

5 July 2018

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NCBI GEO: archive for functional genomics data sets--10 years on

5 July 2018

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The sequence read archive

5 July 2018

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

5 July 2018

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Polymorphic cis- and trans-regulation of human gene expression

5 July 2018

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Cloud-scale RNA-sequencing differential expression analysis with Myrna

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

The case for cloud computing in genome informatics

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Statistical design and analysis of RNA sequencing data

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 July 2018

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Global survey of escape from X inactivation by RNA-sequencing in mouse

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Understanding mechanisms underlying human gene expression variation with RNA sequencing

5 July 2018

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Transcriptome genetics using second generation sequencing in a Caucasian population

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Sex-specific and lineage-specific alternative splicing in primates

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Alternative isoform regulation in human tissue transcriptomes

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

The transcriptional landscape of the yeast genome defined by RNA sequencing

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Gene-expression variation within and among human populations

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Common genetic variants account for differences in gene expression among ethnic groups

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

Bioconductor: open software development for computational biology and bioinformatics

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229291

5 July 2018

Identifiers

DOI

10.1186/1471-2105-12-449

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journals/bmcbi/FrazeeLL11

30 July 2017

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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1 reference

30 July 2017

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PubMed ID

22087737