Database search algorithm for identification of intact cross-links in proteins and peptides using tandem mass spectrometry. (Q34077633)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20469931%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

title

Database search algorithm for identification of intact cross-links in proteins and peptides using tandem mass spectrometry (English)

1 reference

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2 February 2020

0 references

2

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2 February 2020

Michael A. Freitas

5

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2 February 2020

author name string

Hua Xu

1

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2 February 2020

Liwen Zhang

3

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2 February 2020

Ming-Daw Tsai

4

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2 February 2020

publication date

1 July 2010

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Journal of Proteome Research

2 February 2020

published in

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2 February 2020

volume

9

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2 February 2020

issue

7

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2 February 2020

page(s)

3384-3393

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

2 February 2020

cites work

1 reference

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A hierarchical MS2/MS3 database search algorithm for automated analysis of phosphopeptide tandem mass spectra

5 July 2018

1 reference

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MassMatrix: a database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data

5 July 2018

1 reference

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Monte carlo simulation-based algorithms for analysis of shotgun proteomic data

5 July 2018

1 reference

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Identification of cross-linked peptides from large sequence databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4141472

Identification and characterization of disulfide bonds in proteins and peptides from tandem MS data by use of the MassMatrix MS/MS search engine

5 July 2018

1 reference

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A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data

5 July 2018

1 reference

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

5 July 2018

1 reference

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Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions.

5 July 2018

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Mass spectrometric analysis of protein interactions.

5 July 2018

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Identification and mapping of protein-protein interactions by a combination of cross-linking, cleavage, and proteomics

5 July 2018

1 reference

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Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

5 July 2018

1 reference

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Open mass spectrometry search algorithm

5 July 2018

1 reference

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Fragmentation pathways of protonated peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4141472

Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes

5 July 2018

1 reference

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MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides.

5 July 2018

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Chemical cross-linking and mass spectrometry for protein structural modeling.

5 July 2018

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Mass spectrometry-based proteomics

5 July 2018

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Probability-based protein identification by searching sequence databases using mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4141472

The complete genome sequence of Escherichia coli K-12

5 July 2018

1 reference

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High-resolution three-dimensional structure of horse heart cytochrome c

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4141472

Shotgun cross-linking analysis for studying quaternary and tertiary protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4141472

Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4141472

Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4141472

9 December 2018

Identifiers

DOI

10.1021/PR100369Y

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20469931%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20469931%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference