Integrating genome-wide genetic variations and monocyte expression data reveals trans-regulated gene modules in humans (Q34092395)

31 July 2017

title

Integrating genome-wide genetic variations and monocyte expression data reveals trans-regulated gene modules in humans (English)

1 reference

31 July 2017

24

1 reference

31 July 2017

30

Heribert Schunkert

0 references

Jeanette Erdmann

23

Jeanette Erdmann

0 references

Arne Deiseroth

Arne Deiseroth

8

0 references

Seraya Maouche

Seraya Maouche

4

0 references

Raphaele Castagne

Raphaele Castagné

7

0 references

Maxime Rotival

Maxime Rotival

1

0 references

Augusto Rendon

Augusto Rendon

21

0 references

Willem H. Ouwehand

Willem H Ouwehand

28

0 references

Andreas Ziegler

Andreas Ziegler

32

0 references

Gilles Montalescot

27

Gilles Montalescot

1 reference

31 July 2017

Alison H Goodall

33

0 references

Nilesh Samani

29

Nilesh J Samani

1 reference

31 July 2017

36

Stefan Blankenberg

1 reference

31 July 2017

16

Renate B Schnabel

1 reference

31 July 2017

Tanja Zeller

2

1 reference

ORCID Public Data File 2021

Philipp S Wild

3

Philipp S Wild

1 reference

31 July 2017

Medea S Eleftheriadis

14

Medea Eleftheriadis

1 reference

31 July 2017

David-Alexandre Trégouët

31

David-Alexandre Tregouet

1 reference

31 July 2017

5

Silke Szymczak

1 reference

31 July 2017

17

Edith Lubos

1 reference

31 July 2017

19

Heidi Rossmann

1 reference

31 July 2017

6

Arne Schillert

1 reference

31 July 2017

13

Marine Germain

1 reference

31 July 2017

15

Christoph R Sinning

1 reference

31 July 2017

9

Carole Proust

1 reference

31 July 2017

20

Thomas Münzel

1 reference

31 July 2017

35

Laurence Tiret

1 reference

31 July 2017

34

François Cambien

1 reference

31 July 2017

12

Claire Perret

1 reference

31 July 2017

10

Jessy Brocheton

1 reference

31 July 2017

Christian Hengstenberg

25

Christian Hengstenberg

1 reference

31 July 2017

26

Patrick Diemert

1 reference

31 July 2017

11

Tiphaine Godefroy

1 reference

31 July 2017

Karl J Lackner

18

1 reference

31 July 2017

Cardiogenics Consortium

22

1 reference

31 July 2017

publication date

1 December 2011

1 reference

31 July 2017

1 reference

31 July 2017

volume

7

1 reference

31 July 2017

issue

12

1 reference

31 July 2017

page(s)

e1002367

1 reference

Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

1 December 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3228821

inferred from PubMed Central ID database lookup

WGCNA

WGCNA

WGCNA R package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

WGCNA

0 references

cites work

RNA sequencing shows no dosage compensation of the active X-chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Genetics and beyond--the transcriptome of human monocytes and disease susceptibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Cell type-specific gene expression differences in complex tissues

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Geographical genomics of human leukocyte gene expression variation in southern Morocco

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Finding the missing heritability of complex diseases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Genome-wide association study identifies eight loci associated with blood pressure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Genome-wide association study of blood pressure and hypertension

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Advances in systems biology are enhancing our understanding of disease and moving us closer to novel disease treatments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

YEATS domain proteins: a diverse family with many links to chromatin modification and transcription.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Systems genetics of complex traits in Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

A HaemAtlas: characterizing gene expression in differentiated human blood cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Mapping complex disease traits with global gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Genome-wide co-expression analysis in multiple tissues

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Statistical independence of the colocalized association signals for type 1 diabetes and RPS26 gene expression on chromosome 12q13.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Identification and rational redesign of peptide ligands to CRIP1, a novel biomarker for cancers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

A unified approach to false discovery rate estimation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Mapping the genetic architecture of gene expression in human liver

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Variations in DNA elucidate molecular networks that cause disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Genetics of gene expression and its effect on disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Newly identified genetic risk variants for celiac disease related to the immune response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Analyzing M-CSF dependent monocyte/macrophage differentiation: expression modes and meta-modes derived from an independent component analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

A genome-wide association study of global gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Population genomics of human gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Elucidating the altered transcriptional programs in breast cancer using independent component analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

GenABEL: an R library for genome-wide association analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Microarray analysis of human leucocyte subsets: the advantages of positive selection and rapid purification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Integrating genetic and network analysis to characterize genes related to mouse weight

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

An integrative genomics approach to infer causal associations between gene expression and disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

The LIM domain: from the cytoskeleton to the nucleus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Metagenes and molecular pattern discovery using matrix factorization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Application of independent component analysis to microarrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Cytokine signaling and hematopoietic homeostasis are disrupted in Lnk-deficient mice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Using Bayesian networks to analyze expression data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Independent component analysis: algorithms and applications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Vascular addressins are induced on islet vessels during insulitis in nonobese diabetic mice and are involved in lymphoid cell binding to islet endothelium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Linear modes of gene expression determined by independent component analysis

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002367

Essential function for the kinase TAK1 in innate and adaptive immune responses.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002367

Overexpression of CRIP in transgenic mice alters cytokine patterns and the immune response.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002367

Mucosal addressin is required for the development of diabetes in nonobese diabetic mice.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228821

Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors

28 October 2018

1 reference

12 December 2020

The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA

1 reference

12 December 2020

MAdCAM-1 is needed for diabetes development mediated by the T cell clone, BDC-2.5.

1 reference

12 December 2020

Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1002367

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference