A framework for intelligent data acquisition and real-time database searching for shotgun proteomics (Q34101644)

31 July 2017

A framework for intelligent data acquisition and real-time database searching for shotgun proteomics (English)

1 reference

31 July 2017

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1 reference

1 reference

Johannes Graumann

1

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Jürgen Cox

series ordinal

4

object named as

Jürgen Cox

1 reference

31 July 2017

5

Matthias Mann

1 reference

31 July 2017

Richard A Scheltema

2

1 reference

PubMed ID

22171319

31 July 2017

Yong Zhang

series ordinal

3

1 reference

31 July 2017

13 December 2011

1 reference

Molecular & Cellular Proteomics

31 July 2017

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31 July 2017

11

1 reference

31 July 2017

3

1 reference

31 July 2017

M111.013185

1 reference

Software lock mass by two-dimensional minimization of peptide mass errors

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Andromeda: a peptide search engine integrated into the MaxQuant environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

5 July 2018

Comprehensive proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Mass spectrometry-based proteomics in cell biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Directed mass spectrometry: towards hypothesis-driven proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Decision tree-driven tandem mass spectrometry for shotgun proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Versatile online-offline engine for automated acquisition of high-resolution tandem mass spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Proteomics of organelles and large cellular structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Mass spectrometry-based proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Direct analysis of protein complexes using mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3316723

Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.M111.013185

Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.M111.013185

21 January 2018

Identifiers

DOI

10.1074/MCP.M111.013185

1 reference

release_xhcd56rogvfnrdvhgbci7qaaf4

31 July 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xhcd56rogvfnrdvhgbci7qaaf4

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3316723

1 reference

31 July 2017

1 reference

PubMed ID

22171319