Cellular dynamic simulator: an event driven molecular simulation environment for cellular physiology (Q34105592)

31 July 2017

Cellular dynamic simulator: an event driven molecular simulation environment for cellular physiology (English)

1 reference

31 July 2017

0 references

Michael J Byrne

1

1 reference

PubMed ID

20361275

31 July 2017

M Neal Waxham

series ordinal

2

1 reference

PubMed ID

20361275

31 July 2017

Yoshihisa Kubota

series ordinal

3

1 reference

31 July 2017

1 June 2010

1 reference

31 July 2017

20

0 references

published in

Neuroinformatics

1 reference

31 July 2017

8

1 reference

31 July 2017

2

1 reference

31 July 2017

63-82

1 reference

https://scigraph.springernature.com/pub.10.1007/s12021-010-9066-x

31 July 2017

0 references

cites work

FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Virtual Cell modelling and simulation software environment.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

GridCell: a stochastic particle-based biological system simulator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Crowding effects on diffusion in solutions and cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

IQ-motif proteins influence intracellular free Ca2+ in hippocampal neurons through their interactions with calmodulin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Anomalous diffusion in Purkinje cell dendrites caused by spines

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

AMPA and NMDA glutamate receptor trafficking: multiple roads for reaching and leaving the synapse

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Stochastic reaction-diffusion simulation with MesoRD.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

AMPA Receptor Trafficking at Excitatory Synapses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Extending unbiased stereology of brain ultrastructure to three-dimensional volumes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Miniature endplate current rise times less than 100 microseconds from improved dual recordings can be modeled with passive acetylcholine diffusion from a synaptic vesicle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

LXXV.A dynamical theory of diffusion for non-electrolytes and the molecular mass of albumin

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS12021-010-9066-X

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Dendritic spine morphology determines membrane-associated protein exchange between dendritic shafts and spine heads

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

First-passage Monte Carlo algorithm: diffusion without all the hops.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2933752

10.1007/S12021-010-9066-X

28 October 2018

Identifiers

DOI

1 reference

31 July 2017

journals/ni/ByrneWK10

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

31 July 2017

1 reference

PubMed ID

20361275