Molecular dynamics of an in vacuo model of duplex d(CGCGAATTCGCG) in the B-form based on the amber 3.0 force field (Q34126356)

31 July 2017

title

Molecular dynamics of an in vacuo model of duplex d(CGCGAATTCGCG) in the B-form based on the amber 3.0 force field (English)

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31 July 2017

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J Srinivasan

1

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31 July 2017

J M Withka

series ordinal

2

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31 July 2017

D L Beveridge

series ordinal

3

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31 July 2017

language of work or name

English

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publication date

1 August 1990

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31 July 2017

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31 July 2017

volume

58

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31 July 2017

issue

2

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31 July 2017

page(s)

533-547

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Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG

31 July 2017

cites work

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Structure of a B-DNA dodecamer: conformation and dynamics

5 July 2018

1 reference

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Conformational flexibility of DNA: polymorphism and handedness

5 July 2018

1 reference

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Flow dichroism evidence for tilting of the bases when DNA is in solution

5 July 2018

1 reference

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DNA Conformation, Dynamics, and Interactions in Solution

5 July 2018

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Refinement of the structure of B-DNA and implications for the analysis of X-ray diffraction data from fibers of biopolymers

5 July 2018

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Sequence-dependent bending of DNA and phasing of nucleosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280992

A molecular dynamics simulation of double-helical B-DNA including counterions and water

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280992

Molecular dynamics simulations of d(C-G-C-G-A) X d(T-C-G-C-G) with and without "hydrated" counterions

5 July 2018

1 reference

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Structure of the DNA-Eco RI endonuclease recognition complex at 3 A resolution

5 July 2018

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Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: application to 5' d(C-G-T-A-C-G)2.

5 July 2018

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Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280992

Defining the structure of irregular nucleic acids: conventions and principles

5 July 2018

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IR vibrational CD in model deoxyoligonucleotides: observation of the B----Z phase transition and extended coupled oscillator intensity calculations.

5 July 2018

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The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

5 July 2018

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Optimised parameters for A-DNA and B-DNA

5 July 2018

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12 December 2020

Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure

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12 December 2020

Structure of a B-DNA dodecamer. III. Geometry of hydration

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12 December 2020

IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Abbreviations and symbols for the description of conformations of polynucleotide chains. Recommendations 1982

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12 December 2020

Ordered water structure around a B-DNA dodecamer. A quantitative study

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12 December 2020

A duplex of the oligonucleotides d(GGGGGTTTTT) and d(AAAAACCCCC) forms an A to B conformational junction in concentrated salt solutions

1 reference

12 December 2020

10.1016/S0006-3495(90)82397-3

Identifiers

DOI

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31 July 2017

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31 July 2017

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