Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements (Q34135780)

31 July 2017

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title

Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements (English)

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31 July 2017

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Van Soolingen D

1

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PubMed ID

11168781

31 July 2017

language of work or name

English

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publication date

1 January 2001

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Journal of Internal Medicine

31 July 2017

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31 July 2017

249

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31 July 2017

1-26

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31 July 2017

1

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Epidemiology of respiratory infectious diseases

31 July 2017

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Tuberculosis: commentary on a reemergent killer

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Molecular diagnosis of tuberculosis: current clinical validity and future perspectives

21 January 2018

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DNA diagnosis of pulmonary infections: particular emphasis on Mycobacterium tuberculosis

21 January 2018

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Mechanisms of multidrug transporters

21 January 2018

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Evolution and spread of SHV extended-spectrum beta-lactamases in gram-negative bacteria

21 January 2018

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Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics.

21 January 2018

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State of the art: typing Mycobacterium tuberculosis.

21 January 2018

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Molecular biology in the diagnosis and epidemiology of tuberculosis

21 January 2018

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Molecular typing methods for Neisseria meningitidis

21 January 2018

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Deoxyribonucleic Acid Relatedness Among Selected Strains of Mycobacterium tuberculosis, Mycobacterium bovis, Mycobacterium bovis BCG, Mycobacterium microti, and Mycobacterium africanum

21 January 2018

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IS6110, an IS-like element of Mycobacterium tuberculosis complex

21 January 2018

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Characterization of a Mycobacterium tuberculosis insertion sequence belonging to the IS3 family

21 January 2018

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An outbreak of multidrug-resistant tuberculosis among hospitalized patients with the acquired immunodeficiency syndrome

21 January 2018

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Hospital outbreak of multidrug-resistant Mycobacterium tuberculosis infections. Factors in transmission to staff and HIV-infected patients.

21 January 2018

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Transmission of multidrug-resistant Mycobacterium tuberculosis among persons with human immunodeficiency virus infection in an urban hospital: epidemiologic and restriction fragment length polymorphism analysis.

21 January 2018

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An outbreak of tuberculosis with accelerated progression among persons infected with the human immunodeficiency virus. An analysis using restriction-fragment-length polymorphisms.

21 January 2018

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A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: characterization of an exceptional isolate from Africa

21 January 2018

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The epidemiology of Mycobacterium leprae: recent insight

21 January 2018

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Mycobacterium canettii, the smooth variant of M. tuberculosis, isolated from a Swiss patient exposed in Africa

21 January 2018

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An mpb-64 flanking sequence specific for Mycobacterium bovis

21 January 2018

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A 12.7 kb fragment of the Mycobacterium tuberculosis genome is not present in Mycobacterium bovis.

21 January 2018

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Two cases of Mycobacterium microti derived tuberculosis in HIV-negative immunocompetent patients

21 January 2018

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https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Anonymous mycobacteria in pulmonary disease

21 January 2018

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Epidemiology of mycobacterial diseases in AIDS.

21 January 2018

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Incidence of Mycobacterium avium-intracellulare complex bacteremia in human immunodeficiency virus-positive patients

21 January 2018

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A prospective evaluation of Mycobacterium avium complex colonization of the respiratory and gastrointestinal tracts of persons with human immunodeficiency virus infection

21 January 2018

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Epidemiology of mycobacterial diseases

21 January 2018

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Clinical and epidemiologic implications of polyclonal infection due to Mycobacterium avium complex

21 January 2018

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21 January 2018

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Molecular biology of Crohn's disease mycobacteria.

21 January 2018

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The role of mycobacteria in Crohn's disease

21 January 2018

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Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA

21 January 2018

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https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium

21 January 2018

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https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Mycobacterium confluentis sp. nov.

21 January 2018

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Mycobacterium celatum sp. nov

21 January 2018

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Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov.

21 January 2018

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Mycobacterium mageritense sp. nov.

21 January 2018

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Mycobacterium novocastrense sp. nov., a rapidly growing photochromogenic mycobacterium

21 January 2018

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Mycobacterium wolinskyi sp. nov. and Mycobacterium goodii sp. nov., two new rapidly growing species related to Mycobacterium smegmatis and associated with human wound infections: a cooperative study from the International Working Group on Mycobacter

21 January 2018

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DNA fingerprinting of Mycobacterium tuberculosis

21 January 2018

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The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods

21 January 2018

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Molecular epidemiology of tuberculosis in the Netherlands: a nationwide study from 1993 through 1997.

21 January 2018

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Analysis of tuberculosis transmission between nationalities in the Netherlands in the period 1993-1995 using DNA fingerprinting

21 January 2018

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Transmission of tuberculosis in the metropolitan area of Zurich: a 3 year survey based on DNA fingerprinting

21 January 2018

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Application of DNA fingerprinting with IS986 to sequential mycobacterial isolates obtained from pulmonary tuberculosis patients in Hong Kong before, during and after short-course chemotherapy.

21 January 2018

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IS6110: Conservation of sequence in the Mycobacterium tuberculosis complex and its utilization in DNA fingerprinting

21 January 2018

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Analysis of the regions responsible for IS6110 RFLP in a single Mycobacterium tuberculosis strain

21 January 2018

1 reference

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Insertion sequence typing of Mycobacterium tuberculosis: characterization of a widespread subtype with a single copy of IS6110.

21 January 2018

1 reference

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DNA fingerprinting with two probes decreases clustering of Mycobacterium tuberculosis.

21 January 2018

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https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Spacer oligotyping of Mycobacterium bovis isolates compared to typing by restriction fragment length polymorphism using PGRS, DR and IS6110 probes

21 January 2018

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https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Disseminated infection due to multidrug-resistant Mycobacterium bovis in a patient who was seropositive for human immunodeficiency virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Mycobacterium tuberculosis Beijing genotype emerging in Vietnam

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Transmission of multidrug-resistant tuberculosis in a large urban setting

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

DNA fragment length polymorphism analysis of Mycobacterium tuberculosis isolates by arbitrarily primed polymerase chain reaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Rapid, amplification-based fingerprinting of Mycobacterium tuberculosis.

21 January 2018

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Epidemiology and molecular typing of an outbreak of tuberculosis in a hostel for homeless men.

21 January 2018

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Tuberculosis in the Caribbean: using spacer oligonucleotide typing to understand strain origin and transmission

21 January 2018

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Restriction fragment length polymorphism and spacer oligonucleotide typing: a comparative analysis of fingerprinting strategies for Mycobacterium bovis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria

21 January 2018

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https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Pulmonary tuberculosis in Harare, Zimbabwe: analysis by spoligotyping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Simultaneous detection and strain differentiation of Mycobacterium tuberculosis complex in paraffin wax embedded tissues and in stained microscopic preparations

21 January 2018

1 reference

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Mycobacterium tuberculosis infection as a zoonotic disease: transmission between humans and elephants

21 January 2018

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Tuberculosis in imported hyrax (Procavia capensis) caused by an unusual variant belonging to the Mycobacterium tuberculosis complex

21 January 2018

1 reference

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Pulmonary tuberculosis due to Mycobacterium microti in a human immunodeficiency virus-infected patient

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Molecular confirmation of bacillus Calmette-Guérin as the cause of pulmonary infection following urinary tract instillation

21 January 2018

1 reference

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Differentiation of Mycobacterium tuberculosis and Mycobacterium bovis BCG by a polymerase chain reaction assay

21 January 2018

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https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Nosocomial transmission of Mycobacterium bovis bacille Calmette-Guerin to children receiving cancer therapy and to their health care providers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

A historical and molecular phylogeny of BCG strains.

21 January 2018

1 reference

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Comparative genomics of BCG vaccines by whole-genome DNA microarray

21 January 2018

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Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis

21 January 2018

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Aspects of tuberculosis in Africa. 3. Genetic 'fingerprinting' for clues to the pathogenesis of tuberculosis

21 January 2018

1 reference

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Analysis of the population structure of Mycobacterium tuberculosis in Ethiopia, Tunisia, and The Netherlands: usefulness of DNA typing for global tuberculosis epidemiology

21 January 2018

1 reference

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Combined numerical analysis based on the molecular description of Mycobacterium tuberculosis by four repetitive sequence-based DNA typing systems.

21 January 2018

1 reference

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Origin and interstate spread of a New York City multidrug-resistant Mycobacterium tuberculosis clone family

21 January 2018

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Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology

21 January 2018

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Characterization of the phylogenetic distribution and chromosomal insertion sites of five IS6110 elements in Mycobacterium tuberculosis: non-random integration in the dnaA-dnaN region.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Influence of sampling on estimates of clustering and recent transmission of Mycobacterium tuberculosis derived from DNA fingerprinting techniques

21 January 2018

1 reference

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Exogenous reinfection as a cause of recurrent tuberculosis after curative treatment.

21 January 2018

1 reference

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Interpretation of restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolates from a state with a large rural population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Molecular approach to identifying route of transmission of tuberculosis in the community.

21 January 2018

1 reference

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Some observations on the pathogenicity of isoniazid-resistant variants of tubercle bacilli.

21 January 2018

1 reference

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Emergence during unsuccessful chemotherapy of multiple drug resistance in a strain of Mycobacterium tuberculosis

21 January 2018

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Outbreaks of drug-resistant tuberculosis at AIDS centre

21 January 2018

1 reference

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The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis

21 January 2018

1 reference

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Quality control in tuberculosis bacteriology. 1. Laboratory studies on isolated positive cultures and the efficiency of direct smear examination

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Quality control in tuberculosis bacteriology. 2. The origin of isolated positive cultures from the sputum of patients in four studies of short course chemotherapy in Africa.

21 January 2018

1 reference

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Retrospective detection of laboratory cross-contamination of Mycobacterium tuberculosis cultures with use of DNA fingerprint analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Differentiation of Australian isolates of Mycobacterium paratuberculosis using pulsed-field gel electrophoresis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Population genetics of Mycobacterium tuberculosis complex in Scotland analysed by pulsed-field gel electrophoresis

21 January 2018

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Molecular epidemiology: application of contemporary techniques to the typing of microorganisms

21 January 2018

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IS902, an insertion element of the chronic-enteritis-causing Mycobacterium avium subsp. silvaticum

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Characterization of IS1110, a highly mobile genetic element from Mycobacterium avium

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Strain typing of the Mycobacterium avium complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Sequence and characteristics of IS900, an insertion element identified in a human Crohn's disease isolate of Mycobacterium paratuberculosis

21 January 2018

1 reference

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The isolation of M. kansasii and M. xenopi from water systems

21 January 2018

1 reference

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Water: the natural habitat of Mycobacterium kansasii?

21 January 2018

1 reference

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Characterization of a major polymorphic tandem repeat in Mycobacterium tuberculosis and its potential use in the epidemiology of Mycobacterium kansasii and Mycobacterium gordonae

21 January 2018

1 reference

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Identification and characterization of IS-like elements in Mycobacterium gordonae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Mycobacterium xenopi IS1395, a novel insertion sequence expanding the IS256 family

21 January 2018

1 reference

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Abscesses due to mycobacterium abscessus linked to injection of unapproved alternative medication.

21 January 2018

1 reference

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Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

21 January 2018

1 reference

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New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Characterization of an IS-like element from Mycobacterium tuberculosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Characterization by restriction endonuclease analysis and DNA hybridization using IS900 of bovine, ovine, caprine and human dependent strains of Mycobacterium paratuberculosis isolated in various localities

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Standardisation of restriction fragment length polymorphism analysis for Mycobacterium avium subspecies paratuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Transmission of Tuberculosis in New York City -- An Analysis by DNA Fingerprinting and Conventional Epidemiologic Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

Transmission between HIV-infected patients of multidrug-resistant tuberculosis caused by Mycobacterium bovis

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2796.2001.00772.X

10.1046/J.1365-2796.2001.00772.X

21 January 2018

Identifiers

DOI

1 reference

31 July 2017

1 reference

PubMed ID

11168781