Practical strategies for the evaluation of high-affinity protein/nucleic acid interactions (Q34138722)

31 July 2017

title

Practical strategies for the evaluation of high-affinity protein/nucleic acid interactions (English)

1 reference

31 July 2017

3

Deborah S Wuttke

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31 July 2017

Sarah E Altschuler

1

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31 July 2017

Karen A Lewis

series ordinal

2

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31 July 2017

publication date

1 January 2013

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Journal of nucleic acids investigation

31 July 2017

published in

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31 July 2017

volume

4

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31 July 2017

issue

1

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31 July 2017

page(s)

19-28

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Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes

31 July 2017

cites work

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DNA-induced dimerization of the single-stranded DNA binding telomeric protein Pot1 from Schizosaccharomyces pombe

5 July 2018

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Schizosaccharomyces pombe protection of telomeres 1 utilizes alternate binding modes to accommodate different telomeric sequences

5 July 2018

1 reference

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Quantitative approaches to monitor protein-nucleic acid interactions using fluorescent probes

5 July 2018

1 reference

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Binding of the Dimeric Deinococcus radiodurans Single-Stranded DNA Binding Protein to Single-Stranded DNA

5 July 2018

1 reference

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Nonadditivity in the recognition of single-stranded DNA by the schizosaccharomyces pombe protection of telomeres 1 DNA-binding domain, Pot1-DBD

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Inhibition of yeast telomerase action by the telomeric ssDNA-binding protein, Cdc13p

5 July 2018

1 reference

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Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions

5 July 2018

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Competition dialysis: a method for the study of structural selective nucleic acid binding

5 July 2018

1 reference

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Saccharomyces cerevisiae replication protein A binds to single-stranded DNA in multiple salt-dependent modes

5 July 2018

1 reference

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A new model for Schizosaccharomyces pombe telomere recognition: the telomeric single-stranded DNA-binding activity of Pot11-389.

5 July 2018

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Distinct contributions of KH domains to substrate binding affinity of Drosophila P-element somatic inhibitor protein

5 July 2018

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Extended DNA binding site in Pot1 broadens sequence specificity to allow recognition of heterogeneous fission yeast telomeres

5 July 2018

1 reference

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Site-directed mutagenesis reveals the thermodynamic requirements for single-stranded DNA recognition by the telomere-binding protein Cdc13.

5 July 2018

1 reference

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Cooperative binding of single-stranded telomeric DNA by the Pot1 protein of Schizosaccharomyces pombe

5 July 2018

1 reference

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Delineation of the high-affinity single-stranded telomeric DNA-binding domain of Saccharomyces cerevisiae Cdc13.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Modern analytical ultracentrifugation in protein science: a tutorial review

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Deriving complex ligand-binding formulas

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Modulation of telomerase activity by telomere DNA-binding proteins in Oxytricha

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

How to measure and predict the molar absorption coefficient of a protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

CAP and RNA polymerase interactions with thelacpromoter: binding stoichiometry and long range effects

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Two binding modes in Escherichia coli single strand binding protein-single stranded DNA complexes. Modulation by NaCl concentration.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Gel retardation at low pH resolves trp repressor-DNA complexes for quantitative study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Determination of binding constants for cooperative site-specific protein-DNA interactions using the gel mobility-shift assay

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Analysis of residuals: criteria for determining goodness-of-fit

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Use of gel retardation to analyze protein-nucleic acid interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Ion effects on ligand-nucleic acid interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

DNA "melting" proteins. I. Effects of bovine pancreatic ribonuclease binding on the conformation and stability of DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

A new method for sequencing DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155600

Thermodynamics of single-stranded RNA and DNA interactions with oligolysines containing tryptophan. Effects of base composition

28 October 2018

1 reference

12 December 2020

Mobility shift DNA-binding assay using gel electrophoresis

1 reference

12 December 2020

Free energy coupling within macromolecules. The chemical work of ligand binding at the individual sites in co-operative systems

1 reference

12 December 2020

Phenomenological theory of gel electrophoresis of protein-nucleic acid complexes

1 reference

12 December 2020

Identifiers

DOI

10.4081/JNAI.2013.E3

1 reference

31 July 2017

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31 July 2017

1 reference