Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine (Q34154619)

31 July 2017

title

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine (English)

1 reference

5-(hydroxymethyl)cytosine

31 July 2017

main subject

1 reference

5-(beta-D-glucosylmethyl)cytosine

ChEBI release 2020-05-28

ChEBI ID

76792

1 reference

ChEBI release 2020-05-28

Chun-Xiao Song

1

1 reference

ORCID Public Data File 2021

author name string

Keith E Szulwach

2

1 reference

31 July 2017

Ye Fu

3

1 reference

31 July 2017

Qing Dai

4

1 reference

31 July 2017

Chengqi Yi

5

1 reference

31 July 2017

Xuekun Li

6

1 reference

31 July 2017

Yujing Li

7

1 reference

31 July 2017

Chih-Hsin Chen

8

1 reference

31 July 2017

Wen Zhang

9

1 reference

31 July 2017

Xing Jian

10

1 reference

31 July 2017

Jing Wang

11

1 reference

31 July 2017

Li Zhang

12

1 reference

31 July 2017

Timothy J Looney

13

1 reference

31 July 2017

Baichen Zhang

14

1 reference

31 July 2017

Lucy A Godley

15

1 reference

31 July 2017

Leslie M Hicks

16

1 reference

31 July 2017

Bruce T Lahn

17

1 reference

31 July 2017

Peng Jin

18

1 reference

31 July 2017

Chuan He

19

1 reference

31 July 2017

publication date

12 December 2010

1 reference

31 July 2017

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31 July 2017

volume

29

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31 July 2017

issue

1

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31 July 2017

page(s)

68-72

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Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Active DNA demethylation: many roads lead to Rome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Conserved role of intragenic DNA methylation in regulating alternative promoters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Direct detection of DNA methylation during single-molecule, real-time sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

A non-heme iron-mediated chemical demethylation in DNA and RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Human DNA methylomes at base resolution show widespread epigenomic differences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Bioorthogonal chemistry: fishing for selectivity in a sea of functionality

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Oxygenase catalyzed 5-methylcytosine hydroxylation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Genome-scale DNA methylation maps of pluripotent and differentiated cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Visualizing metabolically labeled glycoconjugates of living cells by copper-free and fast huisgen cycloadditions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Copper-free click chemistry for dynamic in vivo imaging

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Cancer epigenetics: modifications, screening, and therapy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Stability and flexibility of epigenetic gene regulation in mammalian development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Genomic DNA methylation: the mark and its mediators

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Structural evidence of a passive base-flipping mechanism for beta-glucosyltransferase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Profiling enzyme activities in vivo using click chemistry methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

FeII/alpha-ketoglutarate-dependent hydroxylases and related enzymes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Click Chemistry: Diverse Chemical Function from a Few Good Reactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107705

Quantification of the sixth DNA base hydroxymethylcytosine in the brain

5 July 2018

1 reference

DNA methylation in Drosophila melanogaster.

21 January 2018

1 reference

Promotion of reprogramming to ground state pluripotency by signal inhibition

21 January 2018

1 reference

Cross talk between microRNA and epigenetic regulation in adult neurogenesis

21 January 2018

1 reference

An expression vector tailored for large-scale, high-throughput purification of recombinant proteins

21 January 2018

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

PANTHER: a library of protein families and subfamilies indexed by function

21 January 2018

1 reference

Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools

21 January 2018

1 reference

Glucosylation of deoxyribonucleic acid. III. alpha- and beta-Glucosyl transferases from T4-infected Escherichia coli

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21151123

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT.1732

1 reference

31 July 2017

1 reference

31 July 2017

1 reference