Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA (Q34170676)

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Language	Label	Description	Also known as
English	Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA (English)

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

0 references

author name string

N Foloppe

1

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

A D MacKerell

2

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Europe PubMed Central

PubMed publication ID

31 July 2017

language of work or name

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publication date

1 June 1999

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Europe PubMed Central

PubMed publication ID

31 July 2017

number of pages

13

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based on heuristic

inferred from page(s)

Biophysical Journal

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

76

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Europe PubMed Central

PubMed publication ID

31 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

3206-3218

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Molecular Configuration in Sodium Thymonucleate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

Structural equilibrium of DNA represented with different force fields

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

Influence of sequence on the conformation of the B-DNA helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

The biology of left-handed Z-DNA.

1 reference

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28 July 2018

"...the tyranny of the lattice...".

1 reference

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28 July 2018

Polymorphism of DNA double helices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

Nucleoside conformation is determined by the electronegativity of the sugar substituent.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

High-salt d(CpGpCpG), a left-handed Z' DNA double helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

The anatomy of A-, B-, and Z-DNA.

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28 July 2018

Conformational transitions of poly(dA-dC).poly(dG-dT) induced by high salt or in ethanolic solution

1 reference

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28 July 2018

A Z-like form of poly(dA-dC).poly(dG-dT) in solution?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

Structure of a B-DNA dodecamer: conformation and dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

A base-centred explanation of the B-to-A transition in DNA.

1 reference

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28 July 2018

Effects of methylation on a synthetic polynucleotide: the B--Z transition in poly(dG-m5dC).poly(dG-m5dC).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300289

28 July 2018

Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC)

1 reference

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28 July 2018

Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants

1 reference

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28 July 2018

Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT).

1 reference

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28 July 2018

Molecular orbital calculations on the conformation of nucleic acids and their constituents. I. Conformational energies of beta-nucleosides with C(3')-and C(2')-endo sugars.

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28 July 2018

The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC)

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28 July 2018

Regularities in formation of the spine of hydration in the DNA minor groove and its influence on the DNA structure.

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28 July 2018

Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove

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28 July 2018

A computer aided thermodynamic approach for predicting the formation of Z-DNA in naturally occurring sequences

2 references

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28 July 2018

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977472-2

7 January 2021

The structure of an oligo(dA).oligo(dT) tract and its biological implications

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28 July 2018

Sequence dependence of the B to Z transition in crystals and aqueous NaCl solutions for deoxyoligonucleotides containing all four canonical DNA bases

1 reference

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28 July 2018

Some rules for predicting the base-sequence dependence of DNA conformation

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28 July 2018

Sequence dependent conformations of oligomeric DNA's in aqueous solutions and in crystals

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28 July 2018

Defining the structure of irregular nucleic acids: conventions and principles

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28 July 2018

The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals

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28 July 2018

Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G

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28 July 2018

Conformational sub-states in B-DNA.

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28 July 2018

NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution

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28 July 2018

DNA structure from A to Z.

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28 July 2018

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28 July 2018

Determination of the Activation Energy for Pseudorotation of the Furanose Ring in Nucleosides by 13C Nuclear-Magnetic-Resonance Relaxation

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28 July 2018

Molecular structure of a left-handed double helical DNA fragment at atomic resolution

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28 July 2018

DNA structural forms

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28 October 2018

Molecular structure of r(GCG)d(TATACGC): a DNA--RNA hybrid helix joined to double helical DNA

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28 October 2018

Ab InitioStudy of Stacking Interactions in A- and B-DNA

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7 January 2021

Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

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7 January 2021

Left-handed DNA helices

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7 January 2021

Structural details of double-helix observed for DNAs containing alternating purine and pyrimidine sequences

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Letter: The structure of polydeoxyguanylic acid with polydeoxycytidylic acid

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Molecular orbital calculations on the conformation of nucleic acids and their constituents. II. Conformational energies of nucleosides with C(3')-and C(2')-exo sugars

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Secondary structure of DNA depends on base composition

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Polymorphism of natural DNA

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Geometric Parameters in Nucleic Acids: Nitrogenous Bases

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X-ray studies of two synthetic DNA copolymers

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Structure of a B-DNA dodecamer. III. Geometry of hydration

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A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding protein

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Sequence dependence of the B-A conformational transition of DNA

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Syn-Anti effects on the spatial configuration of polynucleotide chains

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Dependence of B-A Conformational Change in DNA on Base Composition

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Flexibility and conformations of guanosine monophosphates by the Overhauser effect

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Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2'-hydroxyl effects

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A duplex of the oligonucleotides d(GGGGGTTTTT) and d(AAAAACCCCC) forms an A to B conformational junction in concentrated salt solutions

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10.1016/S0006-3495(99)77472-2

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Europe PubMed Central

PubMed publication ID

31 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

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