Controlling for non-independence in comparative analysis of patterns across populations within species (Q34173891)

31 July 2017

1 reference

title

Controlling for non-independence in comparative analysis of patterns across populations within species (English)

1 reference

31 July 2017

Graham N Stone

1

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Sean Nee

series ordinal

2

object named as

Sean Nee

1 reference

31 July 2017

3

Joseph Felsenstein

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language of work or name

English

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publication date

1 May 2011

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31 July 2017

number of pages

15

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Philosophical Transactions of the Royal Society B

inferred from page(s)

published in

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31 July 2017

volume

366

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31 July 2017

issue

1569

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31 July 2017

page(s)

1410-1424

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Overrun by the neighbors: landscape context affects strength and sign of local adaptation.

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Differences in spawning date between populations of common frog reveal local adaptation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Genetic and environmental contributions to variation and population divergence in a broad-spectrum foliar defence of Eucalyptus tricarpa

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Unified framework to evaluate panmixia and migration direction among multiple sampling locations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Local adaptation in Trinidadian guppies alters ecosystem processes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi-trait models for continuous and categorical characters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Isolation with migration models for more than two populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Natural selection drives the fine-scale divergence of a coevolutionary arms race involving a long-mouthed weevil and its obligate host plant

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Host niches and defensive extended phenotypes structure parasitoid wasp communities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

The seven deadly sins of comparative analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Gene tree discordance, phylogenetic inference and the multispecies coalescent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Is a new and general theory of molecular systematics emerging?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Phylogenetic analysis and comparative data: a test and review of evidence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Plant genetics predicts intra-annual variation in phytochemistry and arthropod community structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

How to separate genetic and environmental causes of similarity between relatives

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

A new approach to estimate parameters of speciation models with application to apes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Estimating a geographically explicit model of population divergence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Detecting non-Brownian trait evolution in adaptive radiations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Genetic structure of a foundation species: scaling community phenotypes from the individual to the region

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Plant genotypic diversity predicts community structure and governs an ecosystem process.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

A framework for community and ecosystem genetics: from genes to ecosystems.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Discordance of species trees with their most likely gene trees.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Genetic evidence for complex speciation of humans and chimpanzees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Statistics for correlated data: phylogenies, space, and time

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Inferring phylogeny despite incomplete lineage sorting

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Effect of hybridization of the Quercus crassifolia x Quercus crassipes complex on the community structure of endophagous insects

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Speciational history of Australian grass finches (Poephila) inferred from thirty gene trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Using the quantitative genetic threshold model for inferences between and within species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Inferring the population structure and demography of Drosophila ananassae from multilocus data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Estimating genetic parameters in natural populations using the "animal model"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Quantitative genetic models for describing simultaneous and recursive relationships between phenotypes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

The Phylogenetic Mixed Model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Testing for phylogenetic signal in comparative data: behavioral traits are more labile

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Gene genealogies in a metapopulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Inferring the historical patterns of biological evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Comparative analysis by independent contrasts (CAIC): an Apple Macintosh application for analysing comparative data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Comparative methods for examining adaptation depend on evolutionary models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

The Phylogenetic Regression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Warm-up rates during arousal from torpor in heterothermic mammals: physiological correlates and a comparison with heterothermic insects.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Ecological impacts of genotypic diversity in the clonal seagrass Zostera marina

5 July 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Habitat quality and among-population differentiation in reproductive effort and flowering phenology in the perennial herb Primula farinosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Comparing phylogenetic signal in intraspecific and interspecific body size datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Wild pedigrees: the way forward.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Phylogenies and the Comparative Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Comparative methods with sampling error and within-species variation: contrasts revisited and revised

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

PHYLOGENETIC ANALYSES OF THE CORRELATED EVOLUTION OF CONTINUOUS CHARACTERS: A SIMULATION STUDY.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Geographic Patterns in the Evolution of Resistance and Virulence in Drosophila and Its Parasitoids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Selection at the level of the community: the importance of spatial structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Truth or Consequences: Effects of Phylogenetic Accuracy on Two Comparative Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Accommodating phylogenetic uncertainty in evolutionary studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Space versus phylogeny: disentangling phylogenetic and spatial signals in comparative data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

A Simple Method for Computing the Inverse of a Numerator Relationship Matrix Used in Prediction of Breeding Values

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Regularization Paths for Generalized Linear Models via Coordinate Descent

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Phylogenetic signal, evolutionary process, and rate

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Understanding patterns of genetic diversity in the oak gallwasp Biorhiza pallida: demographic history or a Wolbachia selective sweep?

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

The probability of topological concordance of gene trees and species trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Quantifying the pleistocene history of the oak gall parasitoid Cecidostiba fungosa using twenty intron loci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Extending genomics to natural communities and ecosystems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

The phylogeographical clade trade: tracing the impact of human-mediated dispersal on the colonization of northern Europe by the oak gallwasp Andricus kollari.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Concordant phylogeography and cryptic speciation in two Western Palaearctic oak gall parasitoid species complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Out of Anatolia: longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

The Quantitative Assessment of Phylogenetic Constraints in Comparative Analyses: Sexual Dimorphism in Body Weight Among Primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Within-species variation and measurement error in phylogenetic comparative methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

Phylogenetic tests of ecological and evolutionary hypotheses: checking for phylogenetic independence

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2010.0311

A comparative method for studying adaptation to a randomly evolving environment.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Expected coalescence times and segregating sites in a model of glacial cycles.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Importance of species interactions to community heritability: a genetic basis to trophic-level interactions

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

The effect of intraspecific sample size on type I and type II error rates in comparative studies

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

An intraspecific comparative analysis of character divergence between sympatric species

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Adaptive constraints and the phylogenetic comparative method: a computer simulation test.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081573

Adaptation and the comparative method

28 October 2018

1 reference

12 December 2020

Metapopulation models for historical inference

1 reference

12 December 2020

Plant genetic determinants of arthropod community structure and diversity

1 reference

12 December 2020

The distribution of the coalescence time and the number of pairwise nucleotide differences in the "isolation with migration" model

1 reference

12 December 2020

Tree hybridization and genotypic variation drive cryptic speciation of a specialist mite herbivore

1 reference

12 December 2020

METHODS FOR THE ANALYSIS OF COMPARATIVE DATA IN EVOLUTIONARY BIOLOGY.

1 reference

12 December 2020

THE QUANTITATIVE ASSESSMENT OF PHYLOGENETIC CONSTRAINTS IN COMPARATIVE ANALYSES: SEXUAL DIMORPHISM IN BODY WEIGHT AMONG PRIMATES.

1 reference

12 December 2020

PHYLOGENIES, SPATIAL AUTOREGRESSION, AND THE COMPARATIVE METHOD: A COMPUTER SIMULATION TEST

1 reference

12 December 2020

COMPARATIVE METHODS AT THE SPECIES LEVEL: GEOGRAPHIC VARIATION IN MORPHOLOGY AND GROUP SIZE IN GREY-CROWNED BABBLERS (POMATOSTOMUS TEMPORALIS).

1 reference

12 December 2020

STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION.

1 reference

12 December 2020

Comparative Analysis of Character Displacement and Spatial Adaptations as Illustrated by the Evolution of Dalechampia Blossoms

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSTB.2010.0311

1 reference

31 July 2017

1 reference

31 July 2017

1 reference