Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops (Q34180445)

31 July 2017

Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops (English)

1 reference

31 July 2017

Jason D Kahn

3

0 references

author name string

Laurence M Edelman

series ordinal

1

1 reference

PubMed ID

12547794

31 July 2017

Raymond Cheong

series ordinal

2

1 reference

PubMed ID

12547794

31 July 2017

language of work or name

English

0 references

publication date

1 February 2003

1 reference

31 July 2017

1 reference

31 July 2017

84

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31 July 2017

2 Pt 1

1 reference

31 July 2017

1131-1145

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Protein surface salt bridges and paths for DNA wrapping

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Time-resolved fluorescence resonance energy transfer: a versatile tool for the analysis of nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Fluorescence studies of pyrene maleimide-labeled translin: excimer fluorescence indicates subunits associate in a tail-to-tail configuration to form octamer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Recruitment of HU by piggyback: a special role of GalR in repressosome assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

HMG proteins and DNA flexibility in transcription activation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

DNA bending by an adenine-thymine tract and its role in gene regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Recent advances in FRET: distance determination in protein-DNA complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Solution structure of an A-tract DNA bend

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

DNA constraints on transcription activation in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

A closer view of the conformation of the Lac repressor bound to operator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Use of fluorescence resonance energy transfer to investigate the conformation of DNA substrates bound to the Klenow fragment.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

DNA looping and lac repressor-CAP interaction.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Fluorescence characteristics of 5-carboxytetramethylrhodamine linked covalently to the 5' end of oligonucleotides: multiple conformers of single-stranded and double-stranded dye-DNA complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

The mechanism of CAP-lac repressor binding cooperativity at the E. coli lactose promoter.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Kinetic studies by fluorescence resonance energy transfer employing a double-labeled oligonucleotide: hybridization to the oligonucleotide complement and to single-stranded DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Crystal structure of lac repressor core tetramer and its implications for DNA looping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Upstream operators enhance repression of the lac promoter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

In vivo DNA loops in araCBAD: size limits and helical repeat

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Determination of the extent of DNA bending by an adenine-thymine tract

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Stable DNA loops in vivo and in vitro: roles in gene regulation at a distance and in biophysical characterization of DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

The three operators of the lac operon cooperate in repression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Stability of a Lac repressor mediated "looped complex".

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

AraC-DNA looping: Orientation and distance-dependent loop breaking by the cyclic AMP receptor protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

How Lac repressor finds lac operator in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Fluorescence resonance energy transfer and nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Protein-induced bending and DNA cyclization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Spectral properties of the prototropic forms of fluorescein in aqueous solution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Trajectory of nucleosomal linker DNA studied by fluorescence resonance energy transfer

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Gal repressosome contains an antiparallel DNA loop

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

In vitro interaction of the Escherichia coli cyclic AMP receptor protein with the lactose repressor

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

The side-chain of the amino acid residue in position 110 of the Lac repressor influences its allosteric equilibrium.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Fluorescence resonance energy transfer

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Equilibrium binding of inducer to lac repressor.operator DNA complex.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

DNA binding characteristics of lactose repressor and the trypsin-resistant core repressor

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302690

Charting a course through RNA polymerase

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Fluorescence of tryptophan dipeptides: correlations with the rotamer model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

TATA box DNA deformation with and without the TATA box-binding protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

DNA looping and lac repressor-CAP interaction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. I. Computational analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Characterization of endonucleolytic activity of HIV-1 integrase using a fluorogenic substrate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Cooperative and anticooperative effects in binding of the first and second plasmid Osym operators to a LacI tetramer: evidence for contributions of non-operator DNA binding by wrapping and looping

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

DNA bending induced by high mobility group proteins studied by fluorescence resonance energy transfer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Escherichia coli lac repressor is elongated with its operator DNA binding domains located at both ends

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Designed hyperstable Lac repressor.DNA loop topologies suggest alternative loop geometries

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974929-7

Conformation of Lac repressor tetramer in solution, bound and unbound to operator DNA

7 January 2021

1 reference

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The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme

7 January 2021

1 reference

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DNA nanotechnology: novel DNA constructions

7 January 2021

1 reference

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Characterization of fluorescein-oligonucleotide conjugates and measurement of local electrostatic potential

7 January 2021

1 reference

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DNA curvature in solution measured by fluorescence resonance energy transfer

7 January 2021

1 reference

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Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping

7 January 2021

1 reference

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Intrinsic Bending in GGCC Tracts as Probed by Fluorescence Resonance Energy Transfer

7 January 2021

1 reference

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DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

7 January 2021

1 reference

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DNA bend direction by phase sensitive detection

7 January 2021

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10.1016/S0006-3495(03)74929-7

7 January 2021

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

12547794