Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions. (Q34181399)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

title

Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

author name string

M Patra

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

M T Hyvönen

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

E Falck

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

P Lindqvist

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

I Vattulainen

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

language of work or name

English

0 references

publication date

1 June 2003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

number of pages

10

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

volume

84

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

page(s)

3636-3645

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

Molecular dynamics simulation of spontaneous membrane fusion during a cubic-hexagonal phase transition

4 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Cholesterol-induced modifications in lipid bilayers: a simulation study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Computer simulation studies of model biological membranes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Molecular dynamics simulation of dipalmitoylphosphatidylserine bilayer with Na+ counterions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Structural properties of a highly polyunsaturated lipid bilayer from molecular dynamics simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Electrostatics calculations: recent methodological advances and applications to membranes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Area per lipid and acyl length distributions in fluid phosphatidylcholines determined by (2)H NMR spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Structure of lipid bilayers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

On the truncation of long-range electrostatic interactions in DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Molecular dynamics simulation of dipalmitoylphosphatidylcholine membrane with cholesterol sulfate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Structure of dipalmitoylphosphatidylcholine/cholesterol bilayer at low and high cholesterol concentrations: molecular dynamics simulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Molecular dynamics simulations of biomolecules: long-range electrostatic effects

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Importance of explicit salt ions for protein stability in molecular dynamics simulation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Structure and dynamic properties of diunsaturated 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphatidylcholine lipid bilayer from molecular dynamics simulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

A comparison of DMPC- and DLPE-based lipid bilayers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Restatement of order parameters in biomembranes: calculation of C-C bond order parameters from C-D quadrupolar splittings

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

The membrane dipole potential in a total membrane potential model. Applications to hydrophobic ion interactions with membranes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Magnitude of the solvation pressure depends on dipole potential

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Physical properties of the fluid lipid-bilayer component of cell membranes: a perspective

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Cutoff size does strongly influence molecular dynamics results on solvated polypeptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Membrane dipole potentials, hydration forces, and the ordering of water at membrane surfaces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Interbilayer interactions between sphingomyelin and sphingomyelin/cholesterol bilayers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Polyunsaturated fatty acids in lipid bilayers: intrinsic and environmental contributions to their unique physical properties.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302948

Molecular dynamics with coupling to an external bath

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

Towards better integrators for dissipative particle dynamics simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

Collective motion artifacts arising in long-duration molecular dynamics simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

A fast algorithm for particle simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

GROMACS 3.0: a package for molecular simulation and trajectory analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

Simulation of the Spontaneous Aggregation of Phospholipids into Bilayers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

Integration schemes for dissipative particle dynamics simulations: From softly interacting systems towards hybrid models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

Drug delivery and targeting

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12770872

12 December 2020

inferred from PubMed ID database lookup

Computational modeling of DNA-cationic lipid complexation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12770872

12 December 2020

inferred from PubMed ID database lookup

A smooth particle mesh Ewald method

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2975094-2

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1016/S0006-3495(03)75094-2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12770872%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

PubMed publication ID

12770872

1 reference