How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues (Q34189279)

31 July 2017

title

How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues (English)

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31 July 2017

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3

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31 July 2017

4

Ruth Nussinov

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31 July 2017

2

Ozlem Keskin

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31 July 2017

1

Turkan Haliloglu

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31 July 2017

language of work or name

English

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publication date

13 December 2004

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31 July 2017

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31 July 2017

volume

88

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31 July 2017

issue

3

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31 July 2017

page(s)

1552-1559

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Anchor residues in protein-protein interactions

31 July 2017

cites work

1 reference

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5 July 2018

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New advances in normal mode analysis of supermolecular complexes and applications to structural refinement

5 July 2018

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A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

5 July 2018

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The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks

5 July 2018

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Refinement of F-actin model against fiber diffraction data by long-range normal modes

5 July 2018

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Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

5 July 2018

1 reference

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Insufficiently dehydrated hydrogen bonds as determinants of protein interactions

5 July 2018

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A simple physical model for binding energy hot spots in protein-protein complexes

5 July 2018

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Functional organization of the yeast proteome by systematic analysis of protein complexes

5 July 2018

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Tyr115, gln165 and trp209 contribute to the 1, 2-epoxy-3-(p-nitrophenoxy)propane-conjugating activity of glutathione S-transferase cGSTM1-1

5 July 2018

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Conservation of polar residues as hot spots at protein interfaces

5 July 2018

1 reference

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Proteins with similar architecture exhibit similar large-scale dynamic behavior

5 July 2018

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

5 July 2018

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Detecting protein function and protein-protein interactions from genome sequences

5 July 2018

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Identification of kinetically hot residues in proteins

5 July 2018

1 reference

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Protein folding via binding and vice versa

5 July 2018

1 reference

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Anatomy of hot spots in protein interfaces

5 July 2018

1 reference

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Molecular recognition of human angiogenin by placental ribonuclease inhibitor--an X-ray crystallographic study at 2.0 A resolution.

5 July 2018

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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

5 July 2018

1 reference

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Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation

5 July 2018

1 reference

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Nucleation mechanisms in protein folding

5 July 2018

1 reference

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Structural correlations in protein folding funnels

5 July 2018

1 reference

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The interpretation of protein structures: Estimation of static accessibility

5 July 2018

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Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

5 July 2018

1 reference

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The nature of the accessible and buried surfaces in proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305212

Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues

5 July 2018

1 reference

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Protein-protein interactions; coupling of structurally conserved residues and of hot spots across interfaces. Implications for docking

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305212

Structure-based assembly of protein complexes in yeast

28 October 2018

1 reference

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Monte Carlo simulations of the peptide recognition at the consensus binding site of the constant fragment of human immunoglobulin G: the energy landscape analysis of a hot spot at the intermolecular interface

28 October 2018

1 reference

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Evolutionary conservation of the folding nucleus.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305212

ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions

28 October 2018

1 reference

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Relationship between equilibrium amide proton exchange behavior and the folding pathway of barnase.

28 October 2018

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Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305212

Conserved residues and the mechanism of protein folding

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15596504

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.104.051342

1 reference

31 July 2017

1 reference

31 July 2017

1 reference