A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles (Q34189290)

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English	A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles	scientific article

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scholarly article

1 reference

Europe PubMed Central

31 July 2017

A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles (English)

1 reference

Europe PubMed Central

31 July 2017

author name string

Huan-Xiang Zhou

1

1 reference

Europe PubMed Central

31 July 2017

language of work or name

0 references

publication date

13 December 2004

1 reference

Europe PubMed Central

31 July 2017

Biophysical Journal

1 reference

Europe PubMed Central

31 July 2017

88

1 reference

Europe PubMed Central

31 July 2017

1608-1615

1 reference

Europe PubMed Central

31 July 2017

3

1 reference

Europe PubMed Central

31 July 2017

Kinetics of target site localization of a protein on DNA: a stochastic approach.

1 reference

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Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex

1 reference

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5 July 2018

How do site-specific DNA-binding proteins find their targets?

1 reference

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5 July 2018

T4 replication: what does "processivity" really mean?

1 reference

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The dynamic processivity of the T4 DNA polymerase during replication

1 reference

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Analysis of a one-dimensional random walk with irreversible losses at each step: applications for protein movement on DNA

1 reference

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5 July 2018

Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling

1 reference

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5 July 2018

Dynamic binding of histone H1 to chromatin in living cells

1 reference

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5 July 2018

Rapid exchange of histone H1.1 on chromatin in living human cells

1 reference

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One- and three-dimensional pathways for proteins to reach specific DNA sites

1 reference

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5 July 2018

The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase

1 reference

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5 July 2018

High mobility of proteins in the mammalian cell nucleus

1 reference

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5 July 2018

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase

1 reference

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5 July 2018

Action of DNA repair endonuclease ERCC1/XPF in living cells

1 reference

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5 July 2018

Single-molecule imaging of RNA polymerase-DNA interactions in real time

1 reference

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5 July 2018

Kinetic characterization of linear diffusion of the restriction endonuclease EcoRV on DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

5 July 2018

Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

5 July 2018

Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

5 July 2018

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

1 reference

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5 July 2018

Kinetics of RNA polymerase-promoter complex formation: effects of nonspecific DNA-protein interactions

1 reference

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5 July 2018

Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

5 July 2018

The lac repressor-operator interaction. 3. Kinetic studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

5 July 2018

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes

1 reference

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5 July 2018

Facilitated diffusion of a DNA binding protein on chromatin.

1 reference

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Kinetics of protein-nucleic acid interactions: use of salt effects to probe mechanisms of interaction

1 reference

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5 July 2018

The one-dimensional diffusion coefficient of proteins absorbed on DNA. Hydrodynamic considerations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

5 July 2018

The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

28 October 2018

Obstacle bypass in protein motion along DNA by two-dimensional rather than one-dimensional sliding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

28 October 2018

Comparison of recombination in vitro and in E. coli cells: measure of the effective concentration of DNA in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

28 October 2018

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

28 October 2018

Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

28 October 2018

Thermodynamic parameters governing interaction of EcoRI endonuclease with specific and nonspecific DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305217

28 October 2018

Kinetic studies on Cro repressor-operator DNA interaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15596498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EcoRV restriction endonuclease binds all DNA sequences with equal affinity

1 reference

https://pubmed.ncbi.nlm.nih.gov/15596498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Facilitated diffusion during catalysis by EcoRI endonuclease. Nonspecific interactions in EcoRI catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/15596498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The kinetic mechanism of EcoRI endonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/15596498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancement of Association Rates by Nonspecific Binding to DNA and Cell Membranes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15596498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.104.052688

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

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