Computational methods for gene annotation: the Arabidopsis genome (Q34208065)

31 July 2017

Computational methods for gene annotation: the Arabidopsis genome (English)

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31 July 2017

Cho Y

1

1 reference

PubMed ID

11287224

31 July 2017

Walbot V

series ordinal

2

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PubMed ID

11287224

31 July 2017

language of work or name

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1 April 2001

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Current Opinion in Biotechnology

31 July 2017

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31 July 2017

12

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31 July 2017

2

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31 July 2017

126-130

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Functional genomics in Arabidopsis: large-scale insertional mutagenesis complements the genome sequencing project

31 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Gene traps: tools for plant development and genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Saturation mutagenesis using maize transposons.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

DAtA: database of Arabidopsis thaliana annotation

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Extensive duplication and reshuffling in the Arabidopsis genome.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

The compositional organization and the expression of the Arabidopsis genome

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Clearing a path through the jungle: progress in Arabidopsis genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Progress in Arabidopsis genome sequencing and functional genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence features of the regions of 1,011,550 bp covered by seventeen P1 and TAC clones

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

AXR2 encodes a member of the Aux/IAA protein family

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Highly specific protein sequence motifs for genome analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

1 reference

7 January 2021

Evaluation of gene structure prediction programs.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

EbEST: an automated tool using expressed sequence tags to delineate gene structure

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

GeneMark.hmm: new solutions for gene finding

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Prediction of complete gene structures in human genomic DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Automated gene identification in large-scale genomic sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

ARF1, a transcription factor that binds to auxin response elements

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Errors in genome annotation

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

DNA microarrays for studies of higher plants and other photosynthetic organisms

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Chasing the dream: plant EST microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Monitoring genome-wide expression in plants

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Copying out our ABCs: the role of gene redundancy in interpreting genetic hierarchies

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Alternatively spliced mRNA variants of chloroplast ascorbate peroxidase isoenzymes in spinach leaves.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Light regulates alternative splicing of hydroxypyruvate reductase in pumpkin

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

The Two Forms of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Activase Differ in Sensitivity to Elevated Temperature

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Genomic approaches to plant disease resistance

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Alignment of whole genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Optimal spliced alignment of homologous cDNA to a genomic DNA template

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Homology-based gene structure prediction: simplified matching algorithm using a translated codon (tron) and improved accuracy by allowing for long gaps.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Sequencing solution: use volunteer annotators organized via Internet

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

A green chapter in the book of life

1 reference

https://api.crossref.org/works/10.1016%2FS0958-1669%2800%2900185-3

7 January 2021

10.1016/S0958-1669(00)00185-3

Identifiers

DOI

1 reference

31 July 2017

1 reference

PubMed ID

11287224