A quantitative, high-throughput reverse genetic screen reveals novel connections between Pre-mRNA splicing and 5' and 3' end transcript determinants (Q34220974)

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English	A quantitative, high-throughput reverse genetic screen reveals novel connections between Pre-mRNA splicing and 5' and 3' end transcript determinants	scientific article

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scholarly article

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Europe PubMed Central

31 July 2017

A quantitative, high-throughput reverse genetic screen reveals novel connections between Pre-mRNA splicing and 5' and 3' end transcript determinants (English)

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Europe PubMed Central

31 July 2017

object named as

Tim C Huffaker

6

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author name string

Laura-Oana Albulescu

1

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Europe PubMed Central

31 July 2017

Nevin Sabet

2

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Europe PubMed Central

31 July 2017

Mohanram Gudipati

3

1 reference

Europe PubMed Central

31 July 2017

Nicholas Stepankiw

4

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Europe PubMed Central

31 July 2017

Zane J Bergman

5

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Europe PubMed Central

31 July 2017

Jeffrey A Pleiss

7

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Europe PubMed Central

31 July 2017

publication date

29 March 2012

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Europe PubMed Central

31 July 2017

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Europe PubMed Central

31 July 2017

8

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Europe PubMed Central

31 July 2017

3

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Europe PubMed Central

31 July 2017

e1002530

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Europe PubMed Central

31 July 2017

copyright license

Creative Commons Attribution 4.0 International

29 March 2012

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April 2022 Public Data File from Crossref

copyright status

0 references

Reciprocal intronic and exonic histone modification regions in humans.

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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

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5 July 2018

The genetic landscape of a cell

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5 July 2018

Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome

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5 July 2018

The spliceosome: design principles of a dynamic RNP machine

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5 July 2018

A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing

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5 July 2018

The role of the putative 3' end processing endonuclease Ysh1p in mRNA and snoRNA synthesis

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5 July 2018

A comprehensive strategy enabling high-resolution functional analysis of the yeast genome.

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5 July 2018

Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae

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5 July 2018

Coupling transcription and alternative splicing.

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5 July 2018

Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage

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5 July 2018

Rapid, transcript-specific changes in splicing in response to environmental stress

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5 July 2018

Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components

1 reference

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5 July 2018

YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Assembly of Snu114 into U5 snRNP requires Prp8 and a functional GTPase domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

1 reference

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5 July 2018

Expanding the functional repertoire of CTD kinase I and RNA polymerase II: novel phosphoCTD-associating proteins in the yeast proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Identification of alternative splicing regulators by RNA interference in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Multiple links between transcription and splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Global analysis of protein expression in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Pre-mRNA splicing: awash in a sea of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Functional profiling of the Saccharomyces cerevisiae genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Getting started with yeast

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5 July 2018

Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Systematic genetic analysis with ordered arrays of yeast deletion mutants

1 reference

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5 July 2018

Significance analysis of microarrays applied to the ionizing radiation response

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5 July 2018

Gene ontology: tool for the unification of biology

1 reference

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5 July 2018

Bromodomain factor 1 corresponds to a missing piece of yeast TFIID.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Essential yeast protein with unexpected similarity to subunits of mammalian cleavage and polyadenylation specificity factor (CPSF).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

The human U1 snRNP-specific U1A protein inhibits polyadenylation of its own pre-mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

An enhancer screen identifies a gene that encodes the yeast U1 snRNP A protein: implications for snRNP protein function in pre-mRNA splicing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Exon recognition in vertebrate splicing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

The yeast BDF1 gene encodes a transcription factor involved in the expression of a broad class of genes including snRNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Meiosis-specific RNA splicing in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Efficient association of U2 snRNPs with pre-mRNA requires an essential U2 RNA structural element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

An Intron in the Genes for U3 Small Bucleolar RNAs of the Yeast Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315463

5 July 2018

Isolation of an active step I spliceosome and composition of its RNP core.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002530

21 January 2018

Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002530

21 January 2018

Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002530

21 January 2018

Chromatin organization marks exon-intron structure

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002530

21 January 2018

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002530

21 January 2018

Genome-wide approaches to monitor pre-mRNA splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/22479188

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of ten genes that control ribosome formation in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/22479188

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/22479188

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1002530

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

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