Widespread selection for local RNA secondary structure in coding regions of bacterial genes (Q34227414)

31 July 2017

title

Widespread selection for local RNA secondary structure in coding regions of bacterial genes (English)

1 reference

31 July 2017

Luba Katz

1

1 reference

31 July 2017

Christopher B Burge

series ordinal

2

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31 July 2017

publication date

1 September 2003

1 reference

full work available at URL

31 July 2017

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC403678/

0 references

published in

Genome Research

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31 July 2017

volume

13

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31 July 2017

issue

9

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31 July 2017

page(s)

2042-2051

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Ebola virus VP30-mediated transcription is regulated by RNA secondary structure formation

31 July 2017

cites work

1 reference

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5 July 2018

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5 July 2018

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Precision and functional specificity in mRNA decay

5 July 2018

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5 July 2018

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The ins and outs of group II introns

5 July 2018

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The bI4 group I intron binds directly to both its protein splicing partners, a tRNA synthetase and maturase, to facilitate RNA splicing activity

5 July 2018

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Exoribonucleases and their multiple roles in RNA metabolism

5 July 2018

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An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression

5 July 2018

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Splicing enhancement in the yeast rp51b intron

5 July 2018

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No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

5 July 2018

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5 July 2018

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Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis

5 July 2018

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Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA

5 July 2018

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403678

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

5 July 2018

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5 July 2018

Mitochondrial evolution

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Control of translation initiation in animals.

5 July 2018

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Dissecting the regulatory circuitry of a eukaryotic genome

5 July 2018

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Controlling messenger RNA stability in bacteria: strategies for engineering gene expression

5 July 2018

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RegulonDB: a database on transcriptional regulation in Escherichia coli

5 July 2018

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Intron self-complementarity enforces exon inclusion in a yeast pre-mRNA

5 July 2018

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Ribosome-mediated translational pause and protein domain organization

5 July 2018

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Effect of 5-fluoro- and 5-bromouracil substitution on the translation of human thymidylate synthase mRNA.

5 July 2018

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mRNA stability in mammalian cells

5 July 2018

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Dissecting and analyzing the secondary structure domains of group I introns through the use of chimeric intron constructs

5 July 2018

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

5 July 2018

1 reference

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Evidence for the symbiotic origin of mitochondria

5 July 2018

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

5 July 2018

1 reference

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Optimal alignments in linear space

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403678

Differential translation of the genes encoding the proton-translocating ATPase of Escherichia coli

5 July 2018

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Translational coupling of the two proximal genes in the S10 ribosomal protein operon of Escherichia coli

5 July 2018

1 reference

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Retroregulation of the synthesis of ribosomal proteins L14 and L24 by feedback repressor S8 in Escherichia coli

5 July 2018

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Autogenous control of the S10 ribosomal protein operon of Escherichia coli: genetic dissection of transcriptional and posttranscriptional regulation

5 July 2018

1 reference

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Post-transcriptional control in the polycistronic operon environment: studies of the atp operon of Escherichia coli

5 July 2018

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Differential gene expression from the Escherichia coli atp operon mediated by segmental defferences in mRNA stability

5 July 2018

1 reference

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The endosymbiont hypothesis revisited

5 July 2018

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5' splice site mutations in tau associated with the inherited dementia FTDP-17 affect a stem-loop structure that regulates alternative splicing of exon 10.

5 July 2018

1 reference

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Folding of the MS2 coat protein in Escherichia coli is modulated by translational pauses resulting from mRNA secondary structure and codon usage: a hypothesis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403678

Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3' stabilizing stem and loop structure

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12952875

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural elements required for the localization of ASH1 mRNA and of a green fluorescent protein reporter particle in vivo

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12952875

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12952875

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.1257503

1 reference

31 July 2017

1 reference

31 July 2017

1 reference