IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth (Q34229322)

31 July 2017

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth (English)

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31 July 2017

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Yu Peng

1

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31 July 2017

Henry C M Leung

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2

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31 July 2017

S M Yiu

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3

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31 July 2017

Francis Y L Chin

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4

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31 July 2017

language of work or name

English

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publication date

11 April 2012

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31 July 2017

9

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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31 July 2017

28

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31 July 2017

11

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31 July 2017

1420-1428

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ALLPATHS: de novo assembly of whole-genome shotgun microreads

31 July 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Short read fragment assembly of bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

De novo fragment assembly with short mate-paired reads: Does the read length matter?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Assemblathon 1: a competitive assessment of de novo short read assembly methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Phenotypic connections in surprising places

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Error correction of high-throughput sequencing datasets with non-uniform coverage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Meta-IDBA: a de Novo assembler for metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

An Eulerian path approach to DNA fragment assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Whole genome amplification and de novo assembly of single bacterial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

21 January 2018

A primer on metagenomics

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Assembling the marine metagenome, one cell at a time

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS174

10.1093/BIOINFORMATICS/BTS174

21 January 2018

Identifiers

DOI

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journals/bioinformatics/PengLYC12

31 July 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference