Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation (Q34234879)

31 July 2017

Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation (English)

1 reference

31 July 2017

0 references

Roger E Bumgarner

9

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author name string

Jun Zhu

1

1 reference

31 July 2017

Pavel Sova

2

1 reference

31 July 2017

Qiuwei Xu

3

1 reference

31 July 2017

Kenneth M Dombek

4

1 reference

31 July 2017

Ethan Y Xu

5

1 reference

31 July 2017

Heather Vu

6

1 reference

31 July 2017

Zhidong Tu

7

1 reference

31 July 2017

Rachel B Brem

8

1 reference

31 July 2017

Eric E Schadt

10

1 reference

31 July 2017

language of work or name

English

0 references

publication date

3 April 2012

1 reference

31 July 2017

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31 July 2017

10

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31 July 2017

4

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31 July 2017

e1001301

1 reference

Creative Commons Attribution 4.0 International

31 July 2017

start time

3 April 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Characterizing dynamic changes in the human blood transcriptional network

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The effect of food intake on gene expression in human peripheral blood

6 July 2018

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Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae

6 July 2018

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Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach

6 July 2018

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Integrated pathway analysis of rat urine metabolic profiles and kidney transcriptomic profiles to elucidate the systems toxicology of model nephrotoxicants

6 July 2018

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Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

6 July 2018

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Mapping the genetic architecture of gene expression in human liver

6 July 2018

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Novel families of vacuolar amino acid transporters

6 July 2018

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Gene-environment interaction in yeast gene expression

6 July 2018

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Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling

6 July 2018

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Variations in DNA elucidate molecular networks that cause disease

6 July 2018

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Genetics of gene expression and its effect on disease

6 July 2018

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Genetic basis of proteome variation in yeast

6 July 2018

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Linking metabolic QTLs with network and cis-eQTLs controlling biosynthetic pathways

6 July 2018

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Moving toward a system genetics view of disease

6 July 2018

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Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations

6 July 2018

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Comprehensive QTL analysis of serum cholesterol levels before and after a high-cholesterol diet in SHRSP.

6 July 2018

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Quantification and identification of components in solution mixtures from 1D proton NMR spectra using singular value decomposition

6 July 2018

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Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification

6 July 2018

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Causal inference of regulator-target pairs by gene mapping of expression phenotypes

6 July 2018

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

6 July 2018

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6 July 2018

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From genomics to chemical genomics: new developments in KEGG

6 July 2018

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6 July 2018

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An integrative genomics approach to infer causal associations between gene expression and disease

6 July 2018

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Fine-mapping gene-by-diet interactions on chromosome 13 in a LG/J x SM/J murine model of obesity.

6 July 2018

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Do we need genomic research for the prevention of common diseases with environmental causes?

6 July 2018

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Cis-acting expression quantitative trait loci in mice

6 July 2018

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The landscape of genetic complexity across 5,700 gene expression traits in yeast

6 July 2018

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Influence of sex and diet on quantitative trait loci for HDL cholesterol levels in an SM/J by NZB/BlNJ intercross population

6 July 2018

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Arachidonate 5-lipoxygenase promoter genotype, dietary arachidonic acid, and atherosclerosis

6 July 2018

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Yeast life-span extension by calorie restriction is independent of NAD fluctuation

6 July 2018

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Transcriptional regulatory networks in Saccharomyces cerevisiae

6 July 2018

1 reference

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Genetic dissection of transcriptional regulation in budding yeast

6 July 2018

1 reference

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Error and attack tolerance of complex networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

A sampling of the yeast proteome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

Correlation between protein and mRNA abundance in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

Genome sequence of the nematode C. elegans: a platform for investigating biology

6 July 2018

1 reference

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Synthesis of glutamine, glycine and 10-formyl tetrahydrofolate is coregulated with purine biosynthesis in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

Molecular characterization of GCV3, the Saccharomyces cerevisiae gene coding for the glycine cleavage system hydrogen carrier protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

A regulatory element in the CHA1 promoter which confers inducibility by serine and threonine on Saccharomyces cerevisiae genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

Intake of trans fatty acids and risk of coronary heart disease among women

6 July 2018

1 reference

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WET, a T1- and B1-insensitive water-suppression method for in vivo localized 1H NMR spectroscopy

6 July 2018

1 reference

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Osmostress response of the yeast Saccharomyces.

6 July 2018

1 reference

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A nonparametric approach for mapping quantitative trait loci

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

Multiple trait analysis of genetic mapping for quantitative trait loci.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

Biosynthesis of Branched-Chain Amino Acids in Yeast: Regulation of Leucine Biosynthesis in Prototrophic and Leucine Auxotrophic Strains

6 July 2018

1 reference

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Dynamic aspects of vacuolar and cytosolic amino acid pools of Saccharomyces cerevisiae

6 July 2018

1 reference

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In vitro transcriptional activation by a metabolic intermediate: activation by Leu3 depends on alpha-isopropylmalate

6 July 2018

1 reference

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Adenylate energy charge in Saccharomyces cerevisiae during starvation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317911

The association of SNP276G>T at adiponectin gene with circulating adiponectin and insulin resistance in response to mild weight loss

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

Genotype X diet interactions in mice predisposed to mammary cancer. I. Body weight and fat.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

A network view of disease and compound screening

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

An integrative genomics approach to the reconstruction of gene networks in segregating populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

Elucidating the murine brain transcriptional network in a segregating mouse population to identify core functional modules for obesity and diabetes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001301

Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22509135

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A rapid and reliable method for metabolite extraction in yeast using boiling buffered ethanol

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22509135

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PBIO.1001301

1 reference

31 July 2017

1 reference

31 July 2017

1 reference