Transcriptome-wide discovery of circular RNAs in Archaea (Q34238116)

31 July 2017

Transcriptome-wide discovery of circular RNAs in Archaea (English)

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31 July 2017

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2

Schraga Schwartz

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author name string

Miri Danan

series ordinal

1

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31 July 2017

Sarit Edelheit

series ordinal

3

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31 July 2017

Rotem Sorek

series ordinal

4

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31 July 2017

language of work or name

English

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publication date

2 December 2011

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31 July 2017

Nucleic Acids Research

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31 July 2017

40

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31 July 2017

7

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31 July 2017

3131-3142

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Creative Commons Attribution-NonCommercial 3.0 Unported

31 July 2017

start time

5 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation

6 July 2018

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Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk.

6 July 2018

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A single-base resolution map of an archaeal transcriptome

6 July 2018

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Group I introns: Moving in new directions

6 July 2018

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Insights into how RNase R degrades structured RNA: analysis of the nuclease domain

6 July 2018

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A natural ribozyme with 3',5' RNA ligase activity

6 July 2018

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Alta-Cyclic: a self-optimizing base caller for next-generation sequencing

6 July 2018

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The structure of an archaeal homodimeric ligase which has RNA circularization activity

6 July 2018

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When good transcripts go bad: artifactual RT-PCR 'splicing' and genome analysis

6 July 2018

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Global analysis of mRNA stability in the archaeon Sulfolobus

6 July 2018

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Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.

6 July 2018

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Reverse transcriptase template switching and false alternative transcripts.

6 July 2018

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Viroids and viroid-host interactions.

6 July 2018

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The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus

6 July 2018

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Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

6 July 2018

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Circular box C/D RNAs in Pyrococcus furiosus

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8

6 July 2018

1 reference

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Two reactions of Haloferax volcanii RNA splicing enzymes: joining of exons and circularization of introns

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing

6 July 2018

1 reference

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Introns in protein-coding genes in Archaea

6 July 2018

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Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp

6 July 2018

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Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs

6 July 2018

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The complete genome of the crenarchaeon Sulfolobus solfataricus P2

6 July 2018

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Homologs of small nucleolar RNAs in Archaea

6 July 2018

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Flexible sequence similarity searching with the FASTA3 program package

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Ribonuclease E is a 5'-end-dependent endonuclease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Archaeal introns: splicing, intercellular mobility and evolution.

6 July 2018

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The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

An intron within the 16S ribosomal RNA gene of the archaeon Pyrobaculum aerophilum.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Circular transcripts of the testis-determining gene Sry in adult mouse testis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperature

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Ribosomal RNA introns in archaea and evidence for RNA conformational changes associated with splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

The hepatitis delta (delta) virus possesses a circular RNA.

6 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1009

Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1009

The ability to form full-length intron RNA circles is a general property of nuclear group I introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1009

Two different mechanisms for tRNA ribose methylation in Archaea: a short survey

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1009

Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1009

Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1009

Mis-splicing yields circular RNA molecules.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326292

Stabilization of circular rpsT mRNA demonstrates the 5'-end dependence of RNase E action in vivo

28 October 2018

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12 December 2020

A detailed model of reverse transcription and tests of crucial aspects

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12 December 2020

A pathway of cytochrome b mRNA processing in yeast mitochondria: specific splicing steps and an intron-derived circular DNA

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12 December 2020

Variation, transcription and circular RNAs of the mitochondrial gene for subunit I of cytochrome c oxidase

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12 December 2020

Novel splicing mechanism for the ribosomal RNA intron in the archaebacterium Desulfurococcus mobilis

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12 December 2020

Generation of nuclease resistant circular RNA decoys for HIV-Tat and HIV-Rev by autocatalytic splicing

1 reference

12 December 2020

Sequential 2′-O-Methylation of Archaeal Pre-tRNATrpNucleotides Is Guided by the Intron-encoded buttrans-Acting Box C/D Ribonucleoprotein of Pre-tRNA

1 reference

12 December 2020

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR1009

1 reference

31 July 2017

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31 July 2017

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