HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology (Q34240836)

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13 February 2020

title

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology (English)

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13 February 2020

0 references

6

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13 February 2020

Matthias König

9

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13 February 2020

4

Sascha Bulik

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13 February 2020

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Kristian Rother

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13 February 2020

Anja Karlstaedt

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ORCID Public Data File 2021

Christian Bölling

2

object named as

Christian Bölling

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author name string

Christoph Gille

1

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13 February 2020

Andreas Hoppe

3

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13 February 2020

Sabrina Hoffmann

5

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13 February 2020

Anja Karlstädt

7

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13 February 2020

Ramanan Ganeshan

8

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13 February 2020

Michael Weidlich

11

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13 February 2020

Jörn Behre

12

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13 February 2020

Herrmann-Georg Holzhütter

13

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publication date

1 September 2010

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full work available at URL

13 February 2020

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2964118

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published in

Molecular Systems Biology

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13 February 2020

volume

6

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13 February 2020

page(s)

411

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describes a project that uses

13 February 2020

Cytoscape

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9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

cites work

Identifying essential genes in bacterial metabolic networks with machine learning methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

A global view of protein expression in human cells, tissues, and organs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Genome-scale gene/reaction essentiality and synthetic lethality analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Reactome knowledgebase of human biological pathways and processes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

NCBI GEO: archive for high-throughput functional genomic data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Group contribution method for thermodynamic analysis of complex metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Human metabolic network reconstruction and its impact on drug discovery and development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

KEGG for linking genomes to life and the environment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

The universal protein resource (UniProt)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

BNDB - the Biochemical Network Database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

The Edinburgh human metabolic network reconstruction and its functional analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Global reconstruction of the human metabolic network based on genomic and bibliomic data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

HMDB: the Human Metabolome Database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Angiogenic profile of soft tissue sarcomas based on analysis of circulating factors and microarray gene expression.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Interpreting expression profiles of cancers by genome-wide survey of breadth of expression in normal tissues

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Cytoscape: a software environment for integrated models of biomolecular interaction networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Large-scale analysis of the human and mouse transcriptomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Oxygen: modulator of metabolic zonation and disease of the liver

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Banting Lecture 1997. Control of glucose uptake and release by the liver in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Lipogenesis from ketone bodies in the isolated perfused rat liver. Evidence for the cytosolic activation of acetoacetate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Evolution of energy metabolism. Proton permeability of the inner membrane of liver mitochondria is greater in a mammal than in a reptile

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Metabolic zonation of the liver: regulation and implications for liver function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Hepatocyte Heterogeneity in the Metabolism of Amino Acids and Ammonia

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Thermodynamic-based computational profiling of cellular regulatory control in hepatocyte metabolism

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

A computer model of gluconeogenesis and lipid metabolism in the perfused liver

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

Regulation of hepatic metabolism by enteral delivery of nutrients

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

Detection of stoichiometric inconsistencies in biomolecular models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

The generalized flux-minimization method and its application to metabolic networks affected by enzyme deficiencies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

Integrated energy and flux balance based multiobjective framework for large-scale metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

Pyruvate metabolism in rat liver mitochondria. What is optimized at steady state?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

TarO: a target optimisation system for structural biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

Investigation of metabolic objectives in cultured hepatocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.62

Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Pruning genome-scale metabolic models to consistent ad functionem networks

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964118

Possible interrelationship between gluconeogenesis and ketogenesis in the liver

28 October 2018

1 reference

12 December 2020

Construction of a biological tissue model based on a single-cell model: a computer simulation of metabolic heterogeneity in the liver lobule

1 reference

12 December 2020

Mass flux balance-based model and metabolic flux analysis for collagen synthesis in the fibrogenesis process of human liver

1 reference

12 December 2020

Mitochondrial pyruvate carrier--a possible link between gluconeogenesis and ketogenesis in the liver

1 reference

12 December 2020

Network-based prediction of human tissue-specific metabolism

1 reference

12 December 2020

Citrate and the conversion of carbohydrate into fat. Fatty acid synthesis by a combination of cytoplasm and mitochondria

1 reference

12 December 2020

Cytoscape: a community-based framework for network modeling

1 reference

12 December 2020

Properties and organ distribution of ATP citrate (pro-3S)-lyase

1 reference

12 December 2020

A radiochemical assay for acetoacetyl-CoA synthetase

1 reference

12 December 2020

Structural robustness of metabolic networks with respect to multiple knockouts

1 reference

12 December 2020

Identifiers

DOI

10.1038/MSB.2010.62

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20823849%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20823849%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

20823849

1 reference