A context-based approach to identify the most likely mapping for RNA-seq experiments (Q34248264)

31 July 2017

title

A context-based approach to identify the most likely mapping for RNA-seq experiments (English)

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31 July 2017

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3

Ralf Zimmer

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31 July 2017

Thomas Bonfert

1

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31 July 2017

Gergely Csaba

series ordinal

2

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31 July 2017

Caroline C Friedel

series ordinal

4

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31 July 2017

publication date

19 April 2012

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31 July 2017

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31 July 2017

volume

13 Suppl 6

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31 July 2017

page(s)

S9

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RNASEQR--a streamlined and accurate RNA-seq sequence analysis program

31 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Estimation of alternative splicing isoform frequencies from RNA-Seq data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Towards reliable isoform quantification using RNA-SEQ data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

RNA-Seq gene expression estimation with read mapping uncertainty

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

TopHat: discovering splice junctions with RNA-Seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Mapping and quantifying mammalian transcriptomes by RNA-Seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

Alternative isoform regulation in human tissue transcriptomes

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-S6-S9

RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-S6-S9

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-S6-S9

Accurate estimation of expression levels of homologous genes in RNA-seq experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-S6-S9

BLAT—The BLAST-Like Alignment Tool

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3358662

10.1186/1471-2105-13-S6-S9

28 October 2018

Identifiers

DOI

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journals/bmcbi/BonfertCZF12

31 July 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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31 July 2017

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