jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats (Q34249159)

31 July 2017

jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats (English)

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Extensible Markup Language

31 July 2017

1 reference

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XML

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3

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31 July 2017

Johannes Griss

1

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Juan Antonio Vizcaíno

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Juan Antonio Vizcaíno

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4

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Florian Reisinger

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2

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Florian Reisinger

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PubMed ID

22539430

31 July 2017

language of work or name

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1 March 2012

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31 July 2017

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31 July 2017

12

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31 July 2017

6

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31 July 2017

795-798

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Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

mzML--a community standard for mass spectrometry data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

MGFp: an open Mascot Generic Format parser library implementation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

jmzML, an open-source Java API for mzML, the PSI standard for MS data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

A guide to the Proteomics Identifications Database proteomics data repository

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

ProteoWizard: open source software for rapid proteomics tools development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

A common open representation of mass spectrometry data and its application to proteomics research

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

Open mass spectrometry search algorithm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

Probability-based validation of protein identifications using a modified SEQUEST algorithm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

Probability-based protein identification by searching sequence databases using mass spectrometry data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472022

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPMIC.201100578

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100578

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

22539430