Replication control of plasmid R1: RepA synthesis is regulated by CopA RNA through inhibition of leader peptide translation (Q34249608)

31 July 2017

Replication control of plasmid R1: RepA synthesis is regulated by CopA RNA through inhibition of leader peptide translation (English)

1 reference

Escherichia coli proteins

31 July 2017

1 reference

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20 September 2022

trans-activators

1 reference

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bacterial gene expression regulation

20 September 2022

1 reference

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20 September 2022

author name string

P. Blomberg

series ordinal

1

1 reference

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20 September 2022

K. Nordström

series ordinal

2

1 reference

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20 September 2022

E. G. Wagner

series ordinal

3

1 reference

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20 September 2022

language of work or name

English

0 references

publication date

1 July 1992

1 reference

full work available at URL

31 July 2017

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1378398/?tool=EBI

1 reference

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https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1378398/pdf/?tool=EBI

20 September 2022

file format

Portable Document Format

online access status

open access

1 reference

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https://europepmc.org/articles/PMC556743

20 September 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1378398

https://europepmc.org/articles/PMC556743?pdf=render

20 September 2022

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

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20 September 2022

1 reference

31 July 2017

11

1 reference

31 July 2017

7

1 reference

31 July 2017

2675-2683

1 reference

Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of replication of bacterial plasmids: Genetics, molecular biology, and physiology of the plasmid R1 system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

In vitro gene fusions that join an enzymatically active beta-galactosidase segment to amino-terminal fragments of exogenous proteins: Escherichia coli plasmid vectors for the detection and cloning of translational initiation signals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

In vitro synthesis of protein in microbial systems

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of replication of plasmid R1: translation of the 7k reading frame in the RepA mRNA leader region counteracts the interaction between CopA RNA and CopT RNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

A basic replicon of virulence-associated plasmids of Shigella spp. and enteroinvasive Escherichia coli is homologous with a basic replicon in plasmids of IncF groups

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Nucleotide sequence analysis of RepFIC, a basic replicon present in IncFI plasmids P307 and F, and its relation to the RepA replicon of IncFII plasmids

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

The rapid generation of oligonucleotide-directed mutations at high frequency using phosphorothioate-modified DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

The use of phosphorothioate-modified DNA in restriction enzyme reactions to prepare nicked DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Characterization of the RepFVII replicon of the haemolytic plasmid pSU233: nucleotide sequence of an incFVII determinant.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

pT181 plasmid replication is regulated by a countertranscript-driven transcriptional attenuator

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Secondary structure analysis of the RepA mRNA leader transcript involved in control of replication of plasmid R1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of replication of plasmid R1: kinetics of in vitro interaction between the antisense RNA, CopA, and its target, CopT.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Transcriptional pausing in a region important for plasmid NR1 replication control

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Improved free-energy parameters for predictions of RNA duplex stability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Incompatibility repressor in a RepA-like replicon of the IncFI plasmid ColV2-K94.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Structural analysis of an RNA molecule involved in replication control of plasmid R1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Ribosome gymnastics--degree of difficulty 9.5, style 10.0.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of prokaryotic translational initiation by mRNA secondary structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

The hok killer gene family in gram-negative bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of replication of plasmid R1: the intergenic region between copA and repA modulates the level of expression of repA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of replication of plasmid R1: formation of an initial transient complex is rate-limiting for antisense RNA-target RNA pairing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of replication of plasmid R1: structures and sequences of the antisense RNA, CopA, required for its binding to the target RNA, CopT.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Structural and functional similarities between the replication region of the Yersinia virulence plasmid and the RepFIIA replicons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

The IS10 antisense RNA blocks ribosome binding at the transposase translation initiation site

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Replication control in plasmid R1: duplex formation between the antisense RNA, CopA, and its target, CopT, is not required for inhibition of RepA synthesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Genetic studies of the lac repressor. III. Additional correlation of mutational sites with specific amino acid residues

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Analysis of plasmid genome evolution based on nucleotide-sequence comparison of two related plasmids of Escherichia coli.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=556743

Positive and negative regulations of plasmid CoLIb-P9 repZ gene expression at the translational level

28 October 2018

1 reference

12 December 2020

Regulation of replication of plasmid R1: An analysis of the intergenic region between copA and repA

1 reference

12 December 2020

Translation of phage f1 gene VII occurs from an inherently defective initiation site made functional by coupling

1 reference

12 December 2020

Translational control of phage f1 gene expression by differential activities of the gene V, VII, IX and VIII initiation sites

1 reference

12 December 2020

Lysis gene of bacteriophage MS2 is activated by translation termination at the overlapping coat gene

1 reference

12 December 2020

Copy mutants of plasmid R1: effects of base pair substitutions in the copA gene on the replication control system

1 reference

12 December 2020

Effects of surrounding sequence on the suppression of nonsense codons

1 reference

12 December 2020

Role of leader peptide synthesis in repZ gene expression of the ColIb-P9 plasmid

1 reference

12 December 2020

Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors

1 reference

12 December 2020

An induced mRNA secondary structure enhances repZ translation in plasmid ColIb-P9

1 reference

12 December 2020

10.1002/J.1460-2075.1992.TB05333.X

Identifiers

DOI

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=1378398

20 September 2022

1 reference

31 July 2017

1 reference