A novel computer simulation method for simulating the multiscale transduction dynamics of signal proteins (Q34264763)

1 August 2017

A novel computer simulation method for simulating the multiscale transduction dynamics of signal proteins (English)

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1 August 2017

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2

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1 August 2017

Emanuel Peter

1

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PubMed ID

22462840

1 August 2017

Stephan A Baeurle

series ordinal

3

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PubMed ID

22462840

1 August 2017

language of work or name

English

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publication date

1 March 2012

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Journal of Chemical Physics

1 August 2017

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1 August 2017

136

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1 August 2017

12

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1 August 2017

124112

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The origins and evolution of functional modules: lessons from protein complexes

1 August 2017

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Rho-family GTPases: it's not only Rac and Rho (and I like it).

21 January 2018

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Rac1b, a tumor associated, constitutively active Rac1 splice variant, promotes cellular transformation

21 January 2018

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Algal sensory photoreceptors

21 January 2018

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Phototropin blue-light receptors.

21 January 2018

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The LOV domain: a chromophore module servicing multiple photoreceptors

21 January 2018

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The photochemistry of the light-, oxygen-, and voltage-sensitive domains in the algal blue light receptor phot

21 January 2018

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Mutational analysis of phototropin 1 provides insights into the mechanism underlying LOV2 signal transmission.

21 January 2018

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Blue light-regulated molecular switch of Ser/Thr kinase in phototropin

21 January 2018

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N- and C-terminal flanking regions modulate light-induced signal transduction in the LOV2 domain of the blue light sensor phototropin 1 from Avena sativa

21 January 2018

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Structural basis of a phototropin light switch.

21 January 2018

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Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity.

21 January 2018

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Photoexcited Structure of a Plant Photoreceptor Domain Reveals a Light-Driven Molecular Switch

21 January 2018

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Mechanism of signal transduction of the LOV2-Jα photosensor from Avena sativa

21 January 2018

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A genetically encoded photoactivatable Rac controls the motility of living cells

21 January 2018

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Molecular dynamics and protein function

21 January 2018

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Multiscale modeling of polymer materials using field-theoretic methodologies: a survey about recent developments

21 January 2018

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Dynamics of conformational changes of Arabidopsis phototropin 1 LOV2 with the linker domain.

21 January 2018

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The MARTINI Coarse-Grained Force Field: Extension to Proteins.

21 January 2018

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Reconstruction of atomistic details from coarse-grained structures

21 January 2018

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A meanfield approach to the thermodynamics of a protein-solvent system with application to the oligomerization of the tumor suppressor p53

21 January 2018

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Meanfield approach to the thermodynamics of protein-solvent systems with application to p53.

21 January 2018

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Streptavidin tetramerization and 2D crystallization: a mean-field approach

21 January 2018

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Systematic multiscale simulation of membrane protein systems

21 January 2018

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Reversible multiple time scale molecular dynamics

21 January 2018

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Normal mode partitioning of Langevin dynamics for biomolecules

21 January 2018

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Atomic-level characterization of the structural dynamics of proteins

21 January 2018

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Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)

21 January 2018

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COMPUTING: Screen Savers of the World Unite!

21 January 2018

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Millisecond-scale molecular dynamics simulations on Anton

21 January 2018

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Predicting slow structural transitions in macromolecular systems: Conformational flooding

21 January 2018

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Metadynamics simulation of prion protein: beta-structure stability and the early stages of misfolding.

21 January 2018

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How the folding rate constant of simple, single-domain proteins depends on the number of native contacts

21 January 2018

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Conformational rigidity in a lattice model of proteins.

21 January 2018

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Probing the kinetics of single molecule protein folding

21 January 2018

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Dynamic switching mechanisms in LOV1 and LOV2 domains of plant phototropins

21 January 2018

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Phot-LOV1: photocycle of a blue-light receptor domain from the green alga Chlamydomonas reinhardtii

21 January 2018

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Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii

21 January 2018

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Effect of computational methodology on the conformational dynamics of the protein photosensor LOV1 from Chlamydomonas reinhardtii

21 January 2018

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Illuminating the early signaling pathway of a fungal light-oxygen-voltage photoreceptor.

21 January 2018

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Calculation of near-edge x-ray-absorption fine structure at finite temperatures: spectral signatures of hydrogen bond breaking in liquid water.

21 January 2018

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Observation of high-temperature dynamic crossover in protein hydration water and its relation to reversible denaturation of lysozyme.

21 January 2018

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Validation of the GROMOS force-field parameter set 45Alpha3 against nuclear magnetic resonance data of hen egg lysozyme.

21 January 2018

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Systematic comparison of empirical forcefields for molecular dynamic simulation of insulin.

21 January 2018

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Ab initio quantum chemical investigation of the first steps of the photocycle of phototropin: a model study

21 January 2018

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A conserved glutamine plays a central role in LOV domain signal transmission and its duration

21 January 2018

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Conformational heterogeneity and propagation of structural changes in the LOV2/Jalpha domain from Avena sativa phototropin 1 as recorded by temperature-dependent FTIR spectroscopy

21 January 2018

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Time-resolved Fourier transform infrared study on photoadduct formation and secondary structural changes within the phototropin LOV domain

21 January 2018

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Phosphorylation of RhoGDI by Pak1 mediates dissociation of Rac GTPase

21 January 2018

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The IQGAP1-Rac1 and IQGAP1-Cdc42 interactions: interfaces differ between the complexes

21 January 2018

1 reference

JNK phosphorylation of paxillin, acting through the Rac1 and Cdc42 signaling cascade, mediates neurite extension in N1E-115 cells

21 January 2018

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Principles and applications of the photochemical control of cellular processes.

21 January 2018

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Light activation as a method of regulating and studying gene expression

21 January 2018

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On the limited memory BFGS method for large scale optimization

21 January 2018

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GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

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The GROMOS Biomolecular Simulation Program Package

21 January 2018

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Atomistic Approaches in Modern Biology

21 January 2018

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21 January 2018

Identifiers

DOI

10.1063/1.3697370

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1 August 2017

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PubMed ID

22462840