Estimating RNA-quality using GeneChip microarrays (Q34268387)

1 August 2017

Estimating RNA-quality using GeneChip microarrays (English)

1 reference

1 August 2017

Mario Fasold

1

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1 August 2017

Hans Binder

series ordinal

2

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1 August 2017

language of work or name

English

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publication date

14 May 2012

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1 August 2017

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1 August 2017

13

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1 August 2017

186

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describes a project that uses

1 August 2017

affy

object named as

affy package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Impact of RNA degradation on gene expression profiling.

1 reference

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Washing scaling of GeneChip microarray expression

6 July 2018

1 reference

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Physico-chemical modelling of target depletion during hybridization on oligonulceotide microarrays.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Quality control in microarray assessment of gene expression in human airway epithelium

6 July 2018

1 reference

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Probe-level analysis of expression microarrays characterizes isoform-specific degradation during mouse oocyte maturation

6 July 2018

1 reference

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On the causes of outliers in Affymetrix GeneChip data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization

6 July 2018

1 reference

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Microarray labeling extension values: laboratory signatures for Affymetrix GeneChips

6 July 2018

1 reference

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"Hook"-calibration of GeneChip-microarrays: theory and algorithm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA.

6 July 2018

1 reference

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Big results from small samples: evaluation of amplification protocols for gene expression profiling.

6 July 2018

1 reference

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The highways and byways of mRNA decay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Relationship between gene expression and observed intensities in DNA microarrays--a modeling study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

RNA integrity and the effect on the real-time qRT-PCR performance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

The RIN: an RNA integrity number for assigning integrity values to RNA measurements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Effects of RNA degradation on gene expression analysis of human postmortem tissues

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

affy--analysis of Affymetrix GeneChip data at the probe level

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Effect of agonal and postmortem factors on gene expression profile: quality control in microarray analyses of postmortem human brain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Sensitivity, specificity, and the hybridization isotherms of DNA chips.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Modeling of DNA microarray data by using physical properties of hybridization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Amplified RNA synthesized from limited quantities of heterogeneous cDNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Impact of RNA degradation on gene expression profiles: assessment of different methods to reliably determine RNA quality.

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-186

Evaluation of quality-control criteria for microarray gene expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-186

Quality control for microarray analysis of human brain samples: The impact of postmortem factors, RNA characteristics, and histopathology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-186

An application for assessing quality of RNA hybridized to Affymetrix GeneChips

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-186

Expression profiling--best practices for data generation and interpretation in clinical trials

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Chipping away at the chip bias: RNA degradation in microarray analysis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3519671

Statistical analysis of adsorption models for oligonucleotide microarrays

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22583818

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-186

1 reference

1 August 2017

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1 August 2017

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