Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm. (Q34279604)

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2 February 2020

title

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm (English)

1 reference

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2 February 2020

1 reference

1

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2 February 2020

Timothy Griffin

10

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2 February 2020

author name string

Sricharan Bandhakavi

2

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2 February 2020

LeeAnn Higgins

3

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2 February 2020

Thomas McGowan

4

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2 February 2020

Rongxiao Sa

5

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2 February 2020

Matthew D Stone

6

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2 February 2020

John Chilton

7

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2 February 2020

Edgar A Arriaga

8

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2 February 2020

Sean L Seymour

9

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publication date

1 June 2012

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2 February 2020

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2 February 2020

volume

12

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2 February 2020

issue

11

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2 February 2020

page(s)

1726-1730

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Deep metaproteomic analysis of human salivary supernatant.

2 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618284

Alternative splice variants, a new class of protein cancer biomarker candidates: findings in pancreatic cancer and breast cancer with systems biology implications

6 July 2018

1 reference

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DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618284

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

6 July 2018

1 reference

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A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva

6 July 2018

1 reference

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Proteomics by mass spectrometry: approaches, advances, and applications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618284

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

6 July 2018

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Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval

6 July 2018

1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618284

Precision proteomics: the case for high resolution and high mass accuracy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618284

Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618284

On the proper use of mass accuracy in proteomics.

6 July 2018

1 reference

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Orbitrap Mass Analyzer – Overview and Applications in Proteomics

6 July 2018

1 reference

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Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap.

6 July 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100097

The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100097

When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100097

Nonlinear fitting method for determining local false discovery rates from decoy database searches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100097

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100097

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22623410%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22623410%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

22623410

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22623410%20AND%20SRC:MED&resulttype=core&format=json