SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts (Q34310655)

1 August 2017

title

SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts (English)

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Ruben Abagyan

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author name string

Manuel Rueda

series ordinal

1

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Eugene Raush

series ordinal

3

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1 August 2017

language of work or name

English

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publication date

24 September 2010

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1 August 2017

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volume

26

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issue

21

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page(s)

2784-2785

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A new method for publishing three-dimensional content

1 August 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

How to do an evaluation: pitfalls and traps

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

Optimizing fragment and scaffold docking by use of molecular interaction fingerprints

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

Comparing protein-ligand docking programs is difficult.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

Structural interaction fingerprint (SIFt): a novel method for analyzing three-dimensional protein-ligand binding interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

CAPRI: a Critical Assessment of PRedicted Interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

6 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

Contact area difference (CAD): a robust measure to evaluate accuracy of protein models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981495

Assessment of Docking Poses: Interactions-Based Accuracy Classification (IBAC) versus Crystal Structure Deviations

6 July 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/20871105

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTQ504

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journals/bioinformatics/RuedaKRA10

1 August 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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1 August 2017

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