EuPathDB: the eukaryotic pathogen database (Q34313331)

1 August 2017

title

EuPathDB: the eukaryotic pathogen database (English)

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1 August 2017

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16

Jessica C Kissinger

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Omar S. Harb

Omar S Harb

12

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David S Roos

David S Roos

21

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Cristina Aurrecoechea

1

Cristina Aurrecoechea

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1 August 2017

Gregory R Grant

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Christian J Stoeckert

23

Christian J Stoeckert

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1 August 2017

25

Susanne Warrenfeltz

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1 August 2017

Ana Barreto

2

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1 August 2017

John Brestelli

3

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1 August 2017

Brian P Brunk

4

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1 August 2017

Shon Cade

5

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1 August 2017

Ryan Doherty

6

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1 August 2017

Steve Fischer

7

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1 August 2017

Bindu Gajria

8

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1 August 2017

Xin Gao

9

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1 August 2017

Alan Gingle

10

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1 August 2017

Greg Grant

11

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1 August 2017

Mark Heiges

13

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1 August 2017

Sufen Hu

14

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1 August 2017

John Iodice

15

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1 August 2017

Eileen T Kraemer

17

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1 August 2017

Wei Li

18

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1 August 2017

Deborah F Pinney

19

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1 August 2017

Brian Pitts

20

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1 August 2017

Ganesh Srinivasamoorthy

22

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1 August 2017

Haiming Wang

24

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1 August 2017

language of work or name

English

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publication date

21 November 2012

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1 August 2017

published in

Nucleic Acids Research

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1 August 2017

volume

41

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1 August 2017

issue

Database issue

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1 August 2017

page(s)

D684-91

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Creative Commons Attribution-NonCommercial 3.0 Unported

1 August 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

High-throughput decoding of antitrypanosomal drug efficacy and resistance

1 reference

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Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.

6 July 2018

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VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

GeneDB--an annotation database for pathogens

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

FungiDB: an integrated functional genomics database for fungi

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries.

6 July 2018

1 reference

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ViPR: an open bioinformatics database and analysis resource for virology research.

6 July 2018

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PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

Attenuation of virulence in an apicomplexan hemoparasite results in reduced genome diversity at the population level.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

The Strategies WDK: a graphical search interface and web development kit for functional genomics databases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

Aligning short sequencing reads with Bowtie

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

TB database 2010: overview and update

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

EuPathDB: a portal to eukaryotic pathogen databases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

TriTrypDB: a functional genomic resource for the Trypanosomatidae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

The Sequence Alignment/Map format and SAMtools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

SchistoDB: a Schistosoma mansoni genome resource

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

Regulatory hotspots in the malaria parasite genome dictate transcriptional variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

ToxoDB: an integrated Toxoplasma gondii database resource

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

CryptoDB: a Cryptosporidium bioinformatics resource update

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

The generic genome browser: a building block for a model organism system database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

InterProScan--an integration platform for the signature-recognition methods in InterPro

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531183

6 July 2018

Identifiers

DOI

10.1093/NAR/GKS1113

1 reference

journals/nar/AurrecoecheaBBBCDFGGGGHHHIKKLPPRSSWW13

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 August 2017

1 reference